miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 168802 0.67 0.939701
Target:  5'- gGACgCGCGcGCGGUGGCCAa-ACGGCc- -3'
miRNA:   3'- -UUG-GUGC-UGCCAUUGGUgcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 67444 0.67 0.939701
Target:  5'- cGACgGCGACGu---CgACGACGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCcauuGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 84423 0.67 0.934929
Target:  5'- cACCugGACGGggggGACCgGgGGCGGgGAc -3'
miRNA:   3'- uUGGugCUGCCa---UUGG-UgCUGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 151975 0.67 0.934929
Target:  5'- gGACgACGACGcUGACgGCGGCGGgGu -3'
miRNA:   3'- -UUGgUGCUGCcAUUGgUGCUGCCgUu -5'
1557 3' -55.4 NC_001347.2 + 71642 0.67 0.924685
Target:  5'- uAACCGCuACGcauccGUGGCCGCGGcCGGCGg -3'
miRNA:   3'- -UUGGUGcUGC-----CAUUGGUGCU-GCCGUu -5'
1557 3' -55.4 NC_001347.2 + 156620 0.67 0.924685
Target:  5'- -cCCACcAUGGUcGCCGCuGGCGGCGc -3'
miRNA:   3'- uuGGUGcUGCCAuUGGUG-CUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 228729 0.67 0.919212
Target:  5'- cGCCGCGGCGGauuuCCGCG-CGGgGGa -3'
miRNA:   3'- uUGGUGCUGCCauu-GGUGCuGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 208006 0.68 0.913507
Target:  5'- gAACCGCGucUGGUAccGCUACuGugGGCGAu -3'
miRNA:   3'- -UUGGUGCu-GCCAU--UGGUG-CugCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 140531 0.68 0.913507
Target:  5'- cGCCAagGACGGggGUUugGACGGCAAa -3'
miRNA:   3'- uUGGUg-CUGCCauUGGugCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 78357 0.68 0.913507
Target:  5'- gGACC-CGGCGuGguggGACC-CGGCGGCGc -3'
miRNA:   3'- -UUGGuGCUGC-Ca---UUGGuGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 88596 0.68 0.90757
Target:  5'- gAGCCugGGCGaccugAGCgGCGGCGGCc- -3'
miRNA:   3'- -UUGGugCUGCca---UUGgUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 135256 0.68 0.90757
Target:  5'- gGACCACGcccaGGgccagcaAGCCGCGACGGUu- -3'
miRNA:   3'- -UUGGUGCug--CCa------UUGGUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 115707 0.68 0.90757
Target:  5'- aAACCACaucuuGAUGGUGAgguCCACcGCGGCAu -3'
miRNA:   3'- -UUGGUG-----CUGCCAUU---GGUGcUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 41170 0.68 0.901404
Target:  5'- cGCCGCGGCGGUGGCgAcugggcCGACaGCGc -3'
miRNA:   3'- uUGGUGCUGCCAUUGgU------GCUGcCGUu -5'
1557 3' -55.4 NC_001347.2 + 65833 0.68 0.901404
Target:  5'- gGGCCAgGACccguACUGCGACGGCAGc -3'
miRNA:   3'- -UUGGUgCUGccauUGGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 65692 0.68 0.901404
Target:  5'- cGACCACGAcaCGGUGcuGCUGCGcgacacggugGCGGCGGu -3'
miRNA:   3'- -UUGGUGCU--GCCAU--UGGUGC----------UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 198082 0.68 0.901404
Target:  5'- -gUCGCGGCGGU---CGCGACGGUGAc -3'
miRNA:   3'- uuGGUGCUGCCAuugGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 128434 0.68 0.901404
Target:  5'- -cCCACGGCGccugcugcGUGGCCgucaagcggcGCGACGGCGc -3'
miRNA:   3'- uuGGUGCUGC--------CAUUGG----------UGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 82819 0.68 0.89501
Target:  5'- aAACCGCGuC-GUGAgCGCGGCGGCu- -3'
miRNA:   3'- -UUGGUGCuGcCAUUgGUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 17196 0.68 0.89501
Target:  5'- gAACCugGA-GGUAAuCCACGACgccuuGGCGGa -3'
miRNA:   3'- -UUGGugCUgCCAUU-GGUGCUG-----CCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.