Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1557 | 3' | -55.4 | NC_001347.2 | + | 112776 | 0.68 | 0.889063 |
Target: 5'- -cCCACGACGGgggcGCCGuaggacgcgggauaaGACGGCAAa -3' miRNA: 3'- uuGGUGCUGCCau--UGGUg--------------CUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 14585 | 0.68 | 0.888391 |
Target: 5'- gAGCCACGuCGcGaucACCAUGAUGGCAu -3' miRNA: 3'- -UUGGUGCuGC-Cau-UGGUGCUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 18352 | 0.68 | 0.888391 |
Target: 5'- cGCUGCGGCcGUGGCCAaGACGGCc- -3' miRNA: 3'- uUGGUGCUGcCAUUGGUgCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 196279 | 0.68 | 0.888391 |
Target: 5'- uGCgGCGACGGgcGCgACaACGGCGg -3' miRNA: 3'- uUGgUGCUGCCauUGgUGcUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 208094 | 0.68 | 0.881552 |
Target: 5'- uGCCGCaGAUGGgcGCaC-CGACGGCGGa -3' miRNA: 3'- uUGGUG-CUGCCauUG-GuGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 138815 | 0.68 | 0.881552 |
Target: 5'- aGACCGCagUGGUGGCCACGGUGGUg- -3' miRNA: 3'- -UUGGUGcuGCCAUUGGUGCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 155122 | 0.68 | 0.881552 |
Target: 5'- uACCugGuaugagGCGGccGCCGCGGCGGCc- -3' miRNA: 3'- uUGGugC------UGCCauUGGUGCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 47054 | 0.68 | 0.881552 |
Target: 5'- aGGCCgGCGACGuUAACUgcuacagcuGCGGCGGCGAa -3' miRNA: 3'- -UUGG-UGCUGCcAUUGG---------UGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 126891 | 0.69 | 0.874497 |
Target: 5'- cGGCUACGGCGGccGCauCGACGGCAc -3' miRNA: 3'- -UUGGUGCUGCCauUGguGCUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 77124 | 0.69 | 0.874497 |
Target: 5'- uGCCGCGGCGGUAGuuGCGGCagaggGGUu- -3' miRNA: 3'- uUGGUGCUGCCAUUggUGCUG-----CCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 68676 | 0.69 | 0.860512 |
Target: 5'- --gCACGACGGUAGuagggagauccaugaCGCGGCGGCGc -3' miRNA: 3'- uugGUGCUGCCAUUg--------------GUGCUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 111995 | 0.69 | 0.859755 |
Target: 5'- aAGCUGCGGCGGcuugGGCagcaGCGGCGGCu- -3' miRNA: 3'- -UUGGUGCUGCCa---UUGg---UGCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 82583 | 0.69 | 0.859755 |
Target: 5'- cACCACGaACGuGUGaaGCCGCGGCucGGCAc -3' miRNA: 3'- uUGGUGC-UGC-CAU--UGGUGCUG--CCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 115782 | 0.69 | 0.859755 |
Target: 5'- gAACCcguaGCGGCGGUGGgCACaGCGGCu- -3' miRNA: 3'- -UUGG----UGCUGCCAUUgGUGcUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 117867 | 0.69 | 0.859755 |
Target: 5'- cGACCGCgucaGACGGggcGACCACGucagacgggGCGGCGg -3' miRNA: 3'- -UUGGUG----CUGCCa--UUGGUGC---------UGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 130868 | 0.69 | 0.859755 |
Target: 5'- cGCCA--ACGGUAAUCacaguACGACGGCAAc -3' miRNA: 3'- uUGGUgcUGCCAUUGG-----UGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 106238 | 0.69 | 0.852081 |
Target: 5'- aGGCgGCGGCGGUGGCguUGGCaGCAAu -3' miRNA: 3'- -UUGgUGCUGCCAUUGguGCUGcCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 84616 | 0.69 | 0.852081 |
Target: 5'- gAGCCGuCGugGGUGGCCucGCGGUGGCu- -3' miRNA: 3'- -UUGGU-GCugCCAUUGG--UGCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 129262 | 0.7 | 0.836154 |
Target: 5'- cAACgAUGACGGcgAACCgcaccaucACGGCGGCGAu -3' miRNA: 3'- -UUGgUGCUGCCa-UUGG--------UGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 74120 | 0.7 | 0.810924 |
Target: 5'- cAGCCGCGG-GGUugauACCcaGCGACGGCGu -3' miRNA: 3'- -UUGGUGCUgCCAu---UGG--UGCUGCCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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