miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 1962 0.72 0.698047
Target:  5'- gGGCCgGCGACGGgGACgGCGGCGGgGAc -3'
miRNA:   3'- -UUGG-UGCUGCCaUUGgUGCUGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 7873 0.66 0.96014
Target:  5'- gGACggaaACGGCGGUaguGACCAgguggucagUGGCGGCGAc -3'
miRNA:   3'- -UUGg---UGCUGCCA---UUGGU---------GCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 14585 0.68 0.888391
Target:  5'- gAGCCACGuCGcGaucACCAUGAUGGCAu -3'
miRNA:   3'- -UUGGUGCuGC-Cau-UGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 17196 0.68 0.89501
Target:  5'- gAACCugGA-GGUAAuCCACGACgccuuGGCGGa -3'
miRNA:   3'- -UUGGugCUgCCAUU-GGUGCUG-----CCGUU- -5'
1557 3' -55.4 NC_001347.2 + 18352 0.68 0.888391
Target:  5'- cGCUGCGGCcGUGGCCAaGACGGCc- -3'
miRNA:   3'- uUGGUGCUGcCAUUGGUgCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 29894 0.66 0.943799
Target:  5'- --aCACGACGGggaaAAUCACGAaaggcacCGGCAGc -3'
miRNA:   3'- uugGUGCUGCCa---UUGGUGCU-------GCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 39924 0.66 0.944242
Target:  5'- gGACgGCGACuaguugcguguGGUgcggagGACgGCGACGGCGAa -3'
miRNA:   3'- -UUGgUGCUG-----------CCA------UUGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 41170 0.68 0.901404
Target:  5'- cGCCGCGGCGGUGGCgAcugggcCGACaGCGc -3'
miRNA:   3'- uUGGUGCUGCCAUUGgU------GCUGcCGUu -5'
1557 3' -55.4 NC_001347.2 + 47054 0.68 0.881552
Target:  5'- aGGCCgGCGACGuUAACUgcuacagcuGCGGCGGCGAa -3'
miRNA:   3'- -UUGG-UGCUGCcAUUGG---------UGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 47129 0.72 0.737292
Target:  5'- gGGCgGCGGCGGcaaUGGCCGCGGCaGCGGg -3'
miRNA:   3'- -UUGgUGCUGCC---AUUGGUGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 62645 0.66 0.944242
Target:  5'- cACCAuCG-UGGUAgcGCCGCGACGGgGu -3'
miRNA:   3'- uUGGU-GCuGCCAU--UGGUGCUGCCgUu -5'
1557 3' -55.4 NC_001347.2 + 65692 0.68 0.901404
Target:  5'- cGACCACGAcaCGGUGcuGCUGCGcgacacggugGCGGCGGu -3'
miRNA:   3'- -UUGGUGCU--GCCAU--UGGUGC----------UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 65833 0.68 0.901404
Target:  5'- gGGCCAgGACccguACUGCGACGGCAGc -3'
miRNA:   3'- -UUGGUgCUGccauUGGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 66784 0.77 0.416936
Target:  5'- cGCC-CGACGGUGgugGCgGCGGCGGCAGu -3'
miRNA:   3'- uUGGuGCUGCCAU---UGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 66844 0.72 0.688079
Target:  5'- cAGCCGCGGCGGUGGCgACaACGGg-- -3'
miRNA:   3'- -UUGGUGCUGCCAUUGgUGcUGCCguu -5'
1557 3' -55.4 NC_001347.2 + 67444 0.67 0.939701
Target:  5'- cGACgGCGACGu---CgACGACGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCcauuGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 68676 0.69 0.860512
Target:  5'- --gCACGACGGUAGuagggagauccaugaCGCGGCGGCGc -3'
miRNA:   3'- uugGUGCUGCCAUUg--------------GUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 71642 0.67 0.924685
Target:  5'- uAACCGCuACGcauccGUGGCCGCGGcCGGCGg -3'
miRNA:   3'- -UUGGUGcUGC-----CAUUGGUGCU-GCCGUu -5'
1557 3' -55.4 NC_001347.2 + 74120 0.7 0.810924
Target:  5'- cAGCCGCGG-GGUugauACCcaGCGACGGCGu -3'
miRNA:   3'- -UUGGUGCUgCCAu---UGG--UGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 76632 0.72 0.707962
Target:  5'- cGGCCGCGGCGGaGGCCGaaGCGGCc- -3'
miRNA:   3'- -UUGGUGCUGCCaUUGGUgcUGCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.