miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 77124 0.69 0.874497
Target:  5'- uGCCGCGGCGGUAGuuGCGGCagaggGGUu- -3'
miRNA:   3'- uUGGUGCUGCCAUUggUGCUG-----CCGuu -5'
1557 3' -55.4 NC_001347.2 + 78357 0.68 0.913507
Target:  5'- gGACC-CGGCGuGguggGACC-CGGCGGCGc -3'
miRNA:   3'- -UUGGuGCUGC-Ca---UUGGuGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 78404 0.66 0.959785
Target:  5'- gGGCCACGuCGGgcugcuGCCGCcgccacccggcccGGCGGCGc -3'
miRNA:   3'- -UUGGUGCuGCCau----UGGUG-------------CUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 82167 0.66 0.96014
Target:  5'- uAACCGCGACGcaauuuuuUGugCGCGugGGUg- -3'
miRNA:   3'- -UUGGUGCUGCc-------AUugGUGCugCCGuu -5'
1557 3' -55.4 NC_001347.2 + 82583 0.69 0.859755
Target:  5'- cACCACGaACGuGUGaaGCCGCGGCucGGCAc -3'
miRNA:   3'- uUGGUGC-UGC-CAU--UGGUGCUG--CCGUu -5'
1557 3' -55.4 NC_001347.2 + 82819 0.68 0.89501
Target:  5'- aAACCGCGuC-GUGAgCGCGGCGGCu- -3'
miRNA:   3'- -UUGGUGCuGcCAUUgGUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 84423 0.67 0.934929
Target:  5'- cACCugGACGGggggGACCgGgGGCGGgGAc -3'
miRNA:   3'- uUGGugCUGCCa---UUGG-UgCUGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 84616 0.69 0.852081
Target:  5'- gAGCCGuCGugGGUGGCCucGCGGUGGCu- -3'
miRNA:   3'- -UUGGU-GCugCCAUUGG--UGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 87069 0.66 0.96014
Target:  5'- aGACCGCGcCGGUccaacAGCCGCaugaGGCAAa -3'
miRNA:   3'- -UUGGUGCuGCCA-----UUGGUGcug-CCGUU- -5'
1557 3' -55.4 NC_001347.2 + 88356 0.67 0.939701
Target:  5'- cGCCGCuGGCGGcgcuGCCGCGAgacgacguggaCGGCAc -3'
miRNA:   3'- uUGGUG-CUGCCau--UGGUGCU-----------GCCGUu -5'
1557 3' -55.4 NC_001347.2 + 88596 0.68 0.90757
Target:  5'- gAGCCugGGCGaccugAGCgGCGGCGGCc- -3'
miRNA:   3'- -UUGGugCUGCca---UUGgUGCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 90153 0.66 0.96014
Target:  5'- cACaaaGCGACGGcaaaggcuUAGCCGCGGCcGCGAa -3'
miRNA:   3'- uUGg--UGCUGCC--------AUUGGUGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 90600 0.66 0.96014
Target:  5'- aAACCcCGGCGGaccccggaGACC-UGACGGCAGu -3'
miRNA:   3'- -UUGGuGCUGCCa-------UUGGuGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 97915 0.72 0.717813
Target:  5'- gGGCgGCGGCGGUAACaCACGGCGaaucaguuGCGAc -3'
miRNA:   3'- -UUGgUGCUGCCAUUG-GUGCUGC--------CGUU- -5'
1557 3' -55.4 NC_001347.2 + 98050 0.71 0.784269
Target:  5'- cGCCGCGGCGGcAGCgGCcGCGGCu- -3'
miRNA:   3'- uUGGUGCUGCCaUUGgUGcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 100195 0.74 0.627612
Target:  5'- cGCCGCGGCcucgcccaGGUAGCCGgaGACGGCGGu -3'
miRNA:   3'- uUGGUGCUG--------CCAUUGGUg-CUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 101160 0.73 0.678066
Target:  5'- uGACCA--GCGGcuUGGCCGCGGCGGCGc -3'
miRNA:   3'- -UUGGUgcUGCC--AUUGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 106238 0.69 0.852081
Target:  5'- aGGCgGCGGCGGUGGCguUGGCaGCAAu -3'
miRNA:   3'- -UUGgUGCUGCCAUUGguGCUGcCGUU- -5'
1557 3' -55.4 NC_001347.2 + 106917 0.66 0.963564
Target:  5'- cGCUACGACGuaaAGCCGCGcaucacACGGCGu -3'
miRNA:   3'- uUGGUGCUGCca-UUGGUGC------UGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 109470 0.67 0.939701
Target:  5'- cACCgGCGGCGGc-GCCAUGGCgGGCGc -3'
miRNA:   3'- uUGG-UGCUGCCauUGGUGCUG-CCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.