Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1557 | 3' | -55.4 | NC_001347.2 | + | 156620 | 0.67 | 0.924685 |
Target: 5'- -cCCACcAUGGUcGCCGCuGGCGGCGc -3' miRNA: 3'- uuGGUGcUGCCAuUGGUG-CUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 157998 | 0.72 | 0.707962 |
Target: 5'- aGGCUcgACGGCGGcAGCUGCGGCGGUAGg -3' miRNA: 3'- -UUGG--UGCUGCCaUUGGUGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 165407 | 0.66 | 0.96014 |
Target: 5'- aGACCACGGCGcgcGCCAacgaguUGACGGUGAc -3' miRNA: 3'- -UUGGUGCUGCcauUGGU------GCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 166407 | 0.66 | 0.952638 |
Target: 5'- gGGCCACcguGCGGUGACCcuugGCGuguCGGCu- -3' miRNA: 3'- -UUGGUGc--UGCCAUUGG----UGCu--GCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 168802 | 0.67 | 0.939701 |
Target: 5'- gGACgCGCGcGCGGUGGCCAa-ACGGCc- -3' miRNA: 3'- -UUG-GUGC-UGCCAUUGGUgcUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 173541 | 0.66 | 0.948554 |
Target: 5'- uGGCgGCGGCGGUGG---UGGCGGCAGc -3' miRNA: 3'- -UUGgUGCUGCCAUUgguGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 173665 | 0.66 | 0.961535 |
Target: 5'- -gUgGCGGCGGUggcggcaagaagcacGACCGCGgugGCGGCGGu -3' miRNA: 3'- uuGgUGCUGCCA---------------UUGGUGC---UGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 173738 | 0.73 | 0.668016 |
Target: 5'- uGGCgGCGGCGGUGAUCACGAccaCGGUc- -3' miRNA: 3'- -UUGgUGCUGCCAUUGGUGCU---GCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 180271 | 0.7 | 0.802186 |
Target: 5'- cGACCGCaGCGGUGGCUggagaagcgcaGCGuCGGCGAg -3' miRNA: 3'- -UUGGUGcUGCCAUUGG-----------UGCuGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 182511 | 0.71 | 0.746901 |
Target: 5'- aAGCCGCGuCGGUca-CAgGACGGCGAa -3' miRNA: 3'- -UUGGUGCuGCCAuugGUgCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 191992 | 0.71 | 0.784269 |
Target: 5'- cGGCgGCGACGG--ACgGCGGCGGUAAc -3' miRNA: 3'- -UUGgUGCUGCCauUGgUGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 192047 | 0.75 | 0.527795 |
Target: 5'- cGGCgACGACGGUGGCgGCGAcgacaCGGCGAc -3' miRNA: 3'- -UUGgUGCUGCCAUUGgUGCU-----GCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 194907 | 0.71 | 0.765817 |
Target: 5'- -uCCACGcCGGUAgcaagauccGCCugGGCGGCu- -3' miRNA: 3'- uuGGUGCuGCCAU---------UGGugCUGCCGuu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 196279 | 0.68 | 0.888391 |
Target: 5'- uGCgGCGACGGgcGCgACaACGGCGg -3' miRNA: 3'- uUGgUGCUGCCauUGgUGcUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 196305 | 1.03 | 0.010519 |
Target: 5'- uAACCACGACGGUAACCACGACGGCAAu -3' miRNA: 3'- -UUGGUGCUGCCAUUGGUGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 197249 | 0.66 | 0.963564 |
Target: 5'- cGCCAC-AUGa-AGCCGCGGCGGCGc -3' miRNA: 3'- uUGGUGcUGCcaUUGGUGCUGCCGUu -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 198082 | 0.68 | 0.901404 |
Target: 5'- -gUCGCGGCGGU---CGCGACGGUGAc -3' miRNA: 3'- uuGGUGCUGCCAuugGUGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 208006 | 0.68 | 0.913507 |
Target: 5'- gAACCGCGucUGGUAccGCUACuGugGGCGAu -3' miRNA: 3'- -UUGGUGCu-GCCAU--UGGUG-CugCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 208094 | 0.68 | 0.881552 |
Target: 5'- uGCCGCaGAUGGgcGCaC-CGACGGCGGa -3' miRNA: 3'- uUGGUG-CUGCCauUG-GuGCUGCCGUU- -5' |
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1557 | 3' | -55.4 | NC_001347.2 | + | 222486 | 0.73 | 0.647839 |
Target: 5'- cGAUgACGACGGaGACCGgGACGGUGAu -3' miRNA: 3'- -UUGgUGCUGCCaUUGGUgCUGCCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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