miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 228729 0.67 0.919212
Target:  5'- cGCCGCGGCGGauuuCCGCG-CGGgGGa -3'
miRNA:   3'- uUGGUGCUGCCauu-GGUGCuGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 222486 0.73 0.647839
Target:  5'- cGAUgACGACGGaGACCGgGACGGUGAu -3'
miRNA:   3'- -UUGgUGCUGCCaUUGGUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 208094 0.68 0.881552
Target:  5'- uGCCGCaGAUGGgcGCaC-CGACGGCGGa -3'
miRNA:   3'- uUGGUG-CUGCCauUG-GuGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 208006 0.68 0.913507
Target:  5'- gAACCGCGucUGGUAccGCUACuGugGGCGAu -3'
miRNA:   3'- -UUGGUGCu-GCCAU--UGGUG-CugCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 198082 0.68 0.901404
Target:  5'- -gUCGCGGCGGU---CGCGACGGUGAc -3'
miRNA:   3'- uuGGUGCUGCCAuugGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 197249 0.66 0.963564
Target:  5'- cGCCAC-AUGa-AGCCGCGGCGGCGc -3'
miRNA:   3'- uUGGUGcUGCcaUUGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 196305 1.03 0.010519
Target:  5'- uAACCACGACGGUAACCACGACGGCAAu -3'
miRNA:   3'- -UUGGUGCUGCCAUUGGUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 196279 0.68 0.888391
Target:  5'- uGCgGCGACGGgcGCgACaACGGCGg -3'
miRNA:   3'- uUGgUGCUGCCauUGgUGcUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 194907 0.71 0.765817
Target:  5'- -uCCACGcCGGUAgcaagauccGCCugGGCGGCu- -3'
miRNA:   3'- uuGGUGCuGCCAU---------UGGugCUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 192047 0.75 0.527795
Target:  5'- cGGCgACGACGGUGGCgGCGAcgacaCGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCCAUUGgUGCU-----GCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 191992 0.71 0.784269
Target:  5'- cGGCgGCGACGG--ACgGCGGCGGUAAc -3'
miRNA:   3'- -UUGgUGCUGCCauUGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 182511 0.71 0.746901
Target:  5'- aAGCCGCGuCGGUca-CAgGACGGCGAa -3'
miRNA:   3'- -UUGGUGCuGCCAuugGUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 180271 0.7 0.802186
Target:  5'- cGACCGCaGCGGUGGCUggagaagcgcaGCGuCGGCGAg -3'
miRNA:   3'- -UUGGUGcUGCCAUUGG-----------UGCuGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 173738 0.73 0.668016
Target:  5'- uGGCgGCGGCGGUGAUCACGAccaCGGUc- -3'
miRNA:   3'- -UUGgUGCUGCCAUUGGUGCU---GCCGuu -5'
1557 3' -55.4 NC_001347.2 + 173665 0.66 0.961535
Target:  5'- -gUgGCGGCGGUggcggcaagaagcacGACCGCGgugGCGGCGGu -3'
miRNA:   3'- uuGgUGCUGCCA---------------UUGGUGC---UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 173541 0.66 0.948554
Target:  5'- uGGCgGCGGCGGUGG---UGGCGGCAGc -3'
miRNA:   3'- -UUGgUGCUGCCAUUgguGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 168802 0.67 0.939701
Target:  5'- gGACgCGCGcGCGGUGGCCAa-ACGGCc- -3'
miRNA:   3'- -UUG-GUGC-UGCCAUUGGUgcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 166407 0.66 0.952638
Target:  5'- gGGCCACcguGCGGUGACCcuugGCGuguCGGCu- -3'
miRNA:   3'- -UUGGUGc--UGCCAUUGG----UGCu--GCCGuu -5'
1557 3' -55.4 NC_001347.2 + 165407 0.66 0.96014
Target:  5'- aGACCACGGCGcgcGCCAacgaguUGACGGUGAc -3'
miRNA:   3'- -UUGGUGCUGCcauUGGU------GCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 157998 0.72 0.707962
Target:  5'- aGGCUcgACGGCGGcAGCUGCGGCGGUAGg -3'
miRNA:   3'- -UUGG--UGCUGCCaUUGGUGCUGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.