miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1557 3' -55.4 NC_001347.2 + 87069 0.66 0.96014
Target:  5'- aGACCGCGcCGGUccaacAGCCGCaugaGGCAAa -3'
miRNA:   3'- -UUGGUGCuGCCA-----UUGGUGcug-CCGUU- -5'
1557 3' -55.4 NC_001347.2 + 112090 0.66 0.963564
Target:  5'- gAACC-CGacGCGGUAGCgA-GGCGGCAAc -3'
miRNA:   3'- -UUGGuGC--UGCCAUUGgUgCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 197249 0.66 0.963564
Target:  5'- cGCCAC-AUGa-AGCCGCGGCGGCGc -3'
miRNA:   3'- uUGGUGcUGCcaUUGGUGCUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 173665 0.66 0.961535
Target:  5'- -gUgGCGGCGGUggcggcaagaagcacGACCGCGgugGCGGCGGu -3'
miRNA:   3'- uuGgUGCUGCCA---------------UUGGUGC---UGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 106917 0.66 0.963564
Target:  5'- cGCUACGACGuaaAGCCGCGcaucacACGGCGu -3'
miRNA:   3'- uUGGUGCUGCca-UUGGUGC------UGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 173541 0.66 0.948554
Target:  5'- uGGCgGCGGCGGUGG---UGGCGGCAGc -3'
miRNA:   3'- -UUGgUGCUGCCAUUgguGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 39924 0.66 0.944242
Target:  5'- gGACgGCGACuaguugcguguGGUgcggagGACgGCGACGGCGAa -3'
miRNA:   3'- -UUGgUGCUG-----------CCA------UUGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 140531 0.68 0.913507
Target:  5'- cGCCAagGACGGggGUUugGACGGCAAa -3'
miRNA:   3'- uUGGUg-CUGCCauUGGugCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 208006 0.68 0.913507
Target:  5'- gAACCGCGucUGGUAccGCUACuGugGGCGAu -3'
miRNA:   3'- -UUGGUGCu-GCCAU--UGGUG-CugCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 228729 0.67 0.919212
Target:  5'- cGCCGCGGCGGauuuCCGCG-CGGgGGa -3'
miRNA:   3'- uUGGUGCUGCCauu-GGUGCuGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 71642 0.67 0.924685
Target:  5'- uAACCGCuACGcauccGUGGCCGCGGcCGGCGg -3'
miRNA:   3'- -UUGGUGcUGC-----CAUUGGUGCU-GCCGUu -5'
1557 3' -55.4 NC_001347.2 + 151975 0.67 0.934929
Target:  5'- gGACgACGACGcUGACgGCGGCGGgGu -3'
miRNA:   3'- -UUGgUGCUGCcAUUGgUGCUGCCgUu -5'
1557 3' -55.4 NC_001347.2 + 84423 0.67 0.934929
Target:  5'- cACCugGACGGggggGACCgGgGGCGGgGAc -3'
miRNA:   3'- uUGGugCUGCCa---UUGG-UgCUGCCgUU- -5'
1557 3' -55.4 NC_001347.2 + 156620 0.67 0.924685
Target:  5'- -cCCACcAUGGUcGCCGCuGGCGGCGc -3'
miRNA:   3'- uuGGUGcUGCCAuUGGUG-CUGCCGUu -5'
1557 3' -55.4 NC_001347.2 + 109470 0.67 0.939701
Target:  5'- cACCgGCGGCGGc-GCCAUGGCgGGCGc -3'
miRNA:   3'- uUGG-UGCUGCCauUGGUGCUG-CCGUu -5'
1557 3' -55.4 NC_001347.2 + 88356 0.67 0.939701
Target:  5'- cGCCGCuGGCGGcgcuGCCGCGAgacgacguggaCGGCAc -3'
miRNA:   3'- uUGGUG-CUGCCau--UGGUGCU-----------GCCGUu -5'
1557 3' -55.4 NC_001347.2 + 168802 0.67 0.939701
Target:  5'- gGACgCGCGcGCGGUGGCCAa-ACGGCc- -3'
miRNA:   3'- -UUG-GUGC-UGCCAUUGGUgcUGCCGuu -5'
1557 3' -55.4 NC_001347.2 + 29894 0.66 0.943799
Target:  5'- --aCACGACGGggaaAAUCACGAaaggcacCGGCAGc -3'
miRNA:   3'- uugGUGCUGCCa---UUGGUGCU-------GCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 67444 0.67 0.939701
Target:  5'- cGACgGCGACGu---CgACGACGGCGAc -3'
miRNA:   3'- -UUGgUGCUGCcauuGgUGCUGCCGUU- -5'
1557 3' -55.4 NC_001347.2 + 62645 0.66 0.944242
Target:  5'- cACCAuCG-UGGUAgcGCCGCGACGGgGu -3'
miRNA:   3'- uUGGU-GCuGCCAU--UGGUGCUGCCgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.