miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1558 5' -55 NC_001347.2 + 229656 0.65 0.976267
Target:  5'- uCGCGGGcGUgugGCG-GGUGUGCcgGCGg -3'
miRNA:   3'- -GUGCCC-CGuuaUGCaCCACACG--UGCa -5'
1558 5' -55 NC_001347.2 + 177 0.65 0.976267
Target:  5'- uCGCGGGcGUgugGCG-GGUGUGCcgGCGg -3'
miRNA:   3'- -GUGCCC-CGuuaUGCaCCACACG--UGCa -5'
1558 5' -55 NC_001347.2 + 30884 0.66 0.97375
Target:  5'- gCACGGGGUAcu-CGUGGccgccuggcuUGUGCGUGg -3'
miRNA:   3'- -GUGCCCCGUuauGCACC----------ACACGUGCa -5'
1558 5' -55 NC_001347.2 + 20854 0.66 0.971044
Target:  5'- uUACGGGGCug-GCGUuucuaGGUG-GC-CGUg -3'
miRNA:   3'- -GUGCCCCGuuaUGCA-----CCACaCGuGCA- -5'
1558 5' -55 NC_001347.2 + 108660 0.66 0.968144
Target:  5'- aCGCGucGGGCAAgcagAUGUGGcagGCGCGUc -3'
miRNA:   3'- -GUGC--CCCGUUa---UGCACCacaCGUGCA- -5'
1558 5' -55 NC_001347.2 + 200177 0.66 0.968144
Target:  5'- cCGCGGugaGGaCAAgaagacggaGCGUGGUGUGCgACGg -3'
miRNA:   3'- -GUGCC---CC-GUUa--------UGCACCACACG-UGCa -5'
1558 5' -55 NC_001347.2 + 77360 0.66 0.967843
Target:  5'- cCACGGGGCAGacgaugagcuuccUGCG-GuUGcUGCACGg -3'
miRNA:   3'- -GUGCCCCGUU-------------AUGCaCcAC-ACGUGCa -5'
1558 5' -55 NC_001347.2 + 40400 0.66 0.965043
Target:  5'- uGCGGGGCc--GCGUGGUGgGUccuCGa -3'
miRNA:   3'- gUGCCCCGuuaUGCACCACaCGu--GCa -5'
1558 5' -55 NC_001347.2 + 199293 0.67 0.958219
Target:  5'- gACGGGGUcg-ACGaggcUGGUGaGCGCGa -3'
miRNA:   3'- gUGCCCCGuuaUGC----ACCACaCGUGCa -5'
1558 5' -55 NC_001347.2 + 140338 0.67 0.950534
Target:  5'- cCGCGGGGCuGUGCGaGGccUGUGgGgGUa -3'
miRNA:   3'- -GUGCCCCGuUAUGCaCC--ACACgUgCA- -5'
1558 5' -55 NC_001347.2 + 229530 0.72 0.762554
Target:  5'- -uCGGGGCGcgGCGggugGGUGUGUGCc- -3'
miRNA:   3'- guGCCCCGUuaUGCa---CCACACGUGca -5'
1558 5' -55 NC_001347.2 + 108784 0.73 0.724446
Target:  5'- gACGuGGCAcugcggcACGUGGUGUGCGCGc -3'
miRNA:   3'- gUGCcCCGUua-----UGCACCACACGUGCa -5'
1558 5' -55 NC_001347.2 + 229693 0.74 0.645098
Target:  5'- gGCGGGGUGuguCGgcGGUGUGCGCGg -3'
miRNA:   3'- gUGCCCCGUuauGCa-CCACACGUGCa -5'
1558 5' -55 NC_001347.2 + 214 0.74 0.645098
Target:  5'- gGCGGGGUGuguCGgcGGUGUGCGCGg -3'
miRNA:   3'- gUGCCCCGUuauGCa-CCACACGUGCa -5'
1558 5' -55 NC_001347.2 + 195983 1.07 0.007759
Target:  5'- cCACGGGGCAAUACGUGGUGUGCACGUu -3'
miRNA:   3'- -GUGCCCCGUUAUGCACCACACGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.