miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 64814 0.66 0.985514
Target:  5'- cUGCUGUGGUGUugccuucugcugccCAUuguuuccucagUCGCCGuCAGCg -3'
miRNA:   3'- uGCGGUACCACAu-------------GUA-----------AGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 170761 0.66 0.984826
Target:  5'- -aGCCcgGGcg-GCGUguuuuugcgcaUCGCCGUGGCg -3'
miRNA:   3'- ugCGGuaCCacaUGUA-----------AGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 77298 0.66 0.984826
Target:  5'- gGCGUCGUcGUacuuggGCGUggGCCGCGGCg -3'
miRNA:   3'- -UGCGGUAcCAca----UGUAagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 153267 0.66 0.984826
Target:  5'- uCGCCGUGGuUGUugGc-CGaCGUAGCg -3'
miRNA:   3'- uGCGGUACC-ACAugUaaGCgGCGUCG- -5'
1559 3' -54 NC_001347.2 + 107326 0.66 0.982996
Target:  5'- gGCGCCAgccgacccaGUG-GCGuUUCGCCuGCGGCu -3'
miRNA:   3'- -UGCGGUac-------CACaUGU-AAGCGG-CGUCG- -5'
1559 3' -54 NC_001347.2 + 59824 0.66 0.982996
Target:  5'- uACGCCGUGGg--GCAgUUUGa-GCAGCc -3'
miRNA:   3'- -UGCGGUACCacaUGU-AAGCggCGUCG- -5'
1559 3' -54 NC_001347.2 + 184805 0.66 0.982611
Target:  5'- aGCGCCGauuu-----UUCGCCGCAGCg -3'
miRNA:   3'- -UGCGGUaccacauguAAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 140309 0.66 0.981005
Target:  5'- gACGCuCAcgaaucaccUGGUGgGCug-CGCCGCGGg -3'
miRNA:   3'- -UGCG-GU---------ACCACaUGuaaGCGGCGUCg -5'
1559 3' -54 NC_001347.2 + 154822 0.66 0.978844
Target:  5'- -gGCCAgcGGcGcGCAcagUCGCCGCAGUu -3'
miRNA:   3'- ugCGGUa-CCaCaUGUa--AGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 1239 0.66 0.978844
Target:  5'- cGCGCCAUGc---GCAagUgGUCGCAGCg -3'
miRNA:   3'- -UGCGGUACcacaUGUa-AgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 154915 0.66 0.978162
Target:  5'- aGCGCCGgcgGGUccuacGUugcuacugccggcgACGgcucCGCCGCAGCu -3'
miRNA:   3'- -UGCGGUa--CCA-----CA--------------UGUaa--GCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 199323 0.66 0.976507
Target:  5'- -gGCCGgcaugGGUaUGCAUUCGUUgagGCGGCg -3'
miRNA:   3'- ugCGGUa----CCAcAUGUAAGCGG---CGUCG- -5'
1559 3' -54 NC_001347.2 + 198852 0.66 0.976507
Target:  5'- cAUGCCccGGUGguucuCGUUgaGCCGCuGCa -3'
miRNA:   3'- -UGCGGuaCCACau---GUAAg-CGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 84377 0.66 0.976507
Target:  5'- gGCGCgGaguccugGGUGUGuCGg--GCCGCGGCa -3'
miRNA:   3'- -UGCGgUa------CCACAU-GUaagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 152222 0.66 0.976507
Target:  5'- uUGCaCAUGGUGc-----UGCCGCGGCg -3'
miRNA:   3'- uGCG-GUACCACauguaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 194466 0.66 0.976263
Target:  5'- cGCGCCAcggcgggucguUGGcucccgcUGUGCuggcCGCCGCuGCa -3'
miRNA:   3'- -UGCGGU-----------ACC-------ACAUGuaa-GCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 164822 0.66 0.976263
Target:  5'- -gGCCcagGGccgGCAgggccccUUCGCCGCAGCu -3'
miRNA:   3'- ugCGGua-CCacaUGU-------AAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 47115 0.67 0.973985
Target:  5'- cAUGCCgAUGGUaugggcggcGgcgGCAaUgGCCGCGGCa -3'
miRNA:   3'- -UGCGG-UACCA---------Ca--UGUaAgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 184228 0.67 0.973985
Target:  5'- uCGCUAgcGUGUcgcaGCGUUCGCCGCcguuGCc -3'
miRNA:   3'- uGCGGUacCACA----UGUAAGCGGCGu---CG- -5'
1559 3' -54 NC_001347.2 + 63105 0.67 0.971272
Target:  5'- cCGCCGUGGc-------CGCCGCGGCc -3'
miRNA:   3'- uGCGGUACCacauguaaGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.