miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 65203 0.67 0.963281
Target:  5'- uCGCCGgccGUGUACAcgugcguggacgaccUgUGCCGCGGCu -3'
miRNA:   3'- uGCGGUac-CACAUGU---------------AaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 172160 0.67 0.958389
Target:  5'- gACGCCGUcaGUGUGgGcUUCGC-GCGGCa -3'
miRNA:   3'- -UGCGGUAc-CACAUgU-AAGCGgCGUCG- -5'
1559 3' -54 NC_001347.2 + 153849 0.67 0.958389
Target:  5'- cGCGCCAcguccucGUGUGCcg-CGCCgaGCGGCg -3'
miRNA:   3'- -UGCGGUac-----CACAUGuaaGCGG--CGUCG- -5'
1559 3' -54 NC_001347.2 + 140213 0.67 0.965249
Target:  5'- -gGCguUGGUGUgugGCAcgUGuCCGCAGCu -3'
miRNA:   3'- ugCGguACCACA---UGUaaGC-GGCGUCG- -5'
1559 3' -54 NC_001347.2 + 37670 0.67 0.968363
Target:  5'- -aGCgGUGGgg-GCA-UCGuuGCAGCg -3'
miRNA:   3'- ugCGgUACCacaUGUaAGCggCGUCG- -5'
1559 3' -54 NC_001347.2 + 220105 0.67 0.968363
Target:  5'- uUGUaCGUGGUGUACGUUguggCGCUGCAa- -3'
miRNA:   3'- uGCG-GUACCACAUGUAA----GCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 47115 0.67 0.973985
Target:  5'- cAUGCCgAUGGUaugggcggcGgcgGCAaUgGCCGCGGCa -3'
miRNA:   3'- -UGCGG-UACCA---------Ca--UGUaAgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 184228 0.67 0.973985
Target:  5'- uCGCUAgcGUGUcgcaGCGUUCGCCGCcguuGCc -3'
miRNA:   3'- uGCGGUacCACA----UGUAAGCGGCGu---CG- -5'
1559 3' -54 NC_001347.2 + 103230 0.67 0.971272
Target:  5'- gGCGCCAUGGaUGccgACGa--GCCGCuGUu -3'
miRNA:   3'- -UGCGGUACC-ACa--UGUaagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 63105 0.67 0.971272
Target:  5'- cCGCCGUGGc-------CGCCGCGGCc -3'
miRNA:   3'- uGCGGUACCacauguaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 63126 0.67 0.968363
Target:  5'- cCGCUGUGGccggaGUGCccgUCGCCGCAa- -3'
miRNA:   3'- uGCGGUACCa----CAUGua-AGCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 94818 0.67 0.971272
Target:  5'- uGCGUCAUGaGguagcUGUACA--CGCCGCugAGCa -3'
miRNA:   3'- -UGCGGUAC-C-----ACAUGUaaGCGGCG--UCG- -5'
1559 3' -54 NC_001347.2 + 175059 0.68 0.937349
Target:  5'- gGCGCCGUcuucGGcGUGCAUccCGagaCGCGGCa -3'
miRNA:   3'- -UGCGGUA----CCaCAUGUAa-GCg--GCGUCG- -5'
1559 3' -54 NC_001347.2 + 98048 0.68 0.942015
Target:  5'- aACGCCGcGGcg-GCAgcgGCCGCGGCu -3'
miRNA:   3'- -UGCGGUaCCacaUGUaagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 164683 0.68 0.942015
Target:  5'- gGCGCCGUGGccGUugccGCGUuagCGCCGCuuucGGUa -3'
miRNA:   3'- -UGCGGUACCa-CA----UGUAa--GCGGCG----UCG- -5'
1559 3' -54 NC_001347.2 + 149918 0.68 0.942015
Target:  5'- cCGCCGUGG-GUuuuaagcgGCAguaCGCCGCcGCu -3'
miRNA:   3'- uGCGGUACCaCA--------UGUaa-GCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 141239 0.68 0.954634
Target:  5'- uACGCCGUGGUGccCAUggagaucaagcUC-UCGCGGCu -3'
miRNA:   3'- -UGCGGUACCACauGUA-----------AGcGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 115048 0.68 0.950655
Target:  5'- gACGCgAcGGUGUu--UUCGCCGuCGGUg -3'
miRNA:   3'- -UGCGgUaCCACAuguAAGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 78381 0.68 0.954634
Target:  5'- gGCGCCGUGGUGggaGgaC-CCGCGGg -3'
miRNA:   3'- -UGCGGUACCACaugUaaGcGGCGUCg -5'
1559 3' -54 NC_001347.2 + 17113 0.69 0.921948
Target:  5'- cGCGCCAUGccgGU-CGUcCGCCGuCGGCc -3'
miRNA:   3'- -UGCGGUACca-CAuGUAaGCGGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.