miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 195730 1.11 0.004624
Target:  5'- cACGCCAUGGUGUACAUUCGCCGCAGCu -3'
miRNA:   3'- -UGCGGUACCACAUGUAAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 130210 0.81 0.331357
Target:  5'- aACGCCAUGG-GUACcuacCGCUGCGGCg -3'
miRNA:   3'- -UGCGGUACCaCAUGuaa-GCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 137725 0.76 0.580335
Target:  5'- uCGCCAcauucgaUGGUGUACGcUCGCCGcCAGa -3'
miRNA:   3'- uGCGGU-------ACCACAUGUaAGCGGC-GUCg -5'
1559 3' -54 NC_001347.2 + 39377 0.76 0.581339
Target:  5'- gACGCCGUGGcccgGCGUcgucguaGCCGCAGCa -3'
miRNA:   3'- -UGCGGUACCaca-UGUAag-----CGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 139629 0.76 0.591401
Target:  5'- cACGUCAUGGUGU-CAaUCGCUGC-GCu -3'
miRNA:   3'- -UGCGGUACCACAuGUaAGCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 88341 0.75 0.662247
Target:  5'- -aGCCGUGGUa-ACcgUCGCCGCuGGCg -3'
miRNA:   3'- ugCGGUACCAcaUGuaAGCGGCG-UCG- -5'
1559 3' -54 NC_001347.2 + 89991 0.74 0.712286
Target:  5'- -aGCCcgGcGUGUACAccUGUCGCAGCa -3'
miRNA:   3'- ugCGGuaC-CACAUGUaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 16781 0.73 0.741576
Target:  5'- cGCGCCGgccucaugaaGGUGUACGUgcgUCGCCGCu-- -3'
miRNA:   3'- -UGCGGUa---------CCACAUGUA---AGCGGCGucg -5'
1559 3' -54 NC_001347.2 + 210143 0.72 0.779276
Target:  5'- aGCGCCGUcuuucGUGCcgUCGCCGCAcuGCg -3'
miRNA:   3'- -UGCGGUAcca--CAUGuaAGCGGCGU--CG- -5'
1559 3' -54 NC_001347.2 + 68740 0.72 0.797384
Target:  5'- -gGCCGUGGagcgaGUGC---CGCCGCAGCc -3'
miRNA:   3'- ugCGGUACCa----CAUGuaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 130102 0.72 0.814907
Target:  5'- cGCGCCAUGGccuaugUGUGCucuuucUCGCgCGUGGCc -3'
miRNA:   3'- -UGCGGUACC------ACAUGua----AGCG-GCGUCG- -5'
1559 3' -54 NC_001347.2 + 102416 0.71 0.831779
Target:  5'- aAC-CCAUGGgcgGUGCGgcgCGCCGCAuaccGCa -3'
miRNA:   3'- -UGcGGUACCa--CAUGUaa-GCGGCGU----CG- -5'
1559 3' -54 NC_001347.2 + 6106 0.71 0.831779
Target:  5'- cACGCCGUGG-GUGCGUagaCUGCAGUu -3'
miRNA:   3'- -UGCGGUACCaCAUGUAagcGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 2147 0.71 0.839952
Target:  5'- cACGCgGUGGUcGggGCGgaCGCgGCAGCa -3'
miRNA:   3'- -UGCGgUACCA-Ca-UGUaaGCGgCGUCG- -5'
1559 3' -54 NC_001347.2 + 151879 0.71 0.847939
Target:  5'- gGCGCCc-GGUGUcCGgacggCGCCGCAGg -3'
miRNA:   3'- -UGCGGuaCCACAuGUaa---GCGGCGUCg -5'
1559 3' -54 NC_001347.2 + 167602 0.71 0.855734
Target:  5'- aGCGCCAUu-UGUGCGUagGCCGC-GCa -3'
miRNA:   3'- -UGCGGUAccACAUGUAagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 86906 0.71 0.856503
Target:  5'- gGCGCCAUGcucgcccaggagACAggCGCCGUAGCu -3'
miRNA:   3'- -UGCGGUACcaca--------UGUaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 106400 0.7 0.877196
Target:  5'- aACGCCGgacgagcUGGacaaGUACAgcggcUCGCCGCAGa -3'
miRNA:   3'- -UGCGGU-------ACCa---CAUGUa----AGCGGCGUCg -5'
1559 3' -54 NC_001347.2 + 48842 0.7 0.877905
Target:  5'- cGCGUCAgggcGGUGcgGCGUUCGCgUGCAcGCg -3'
miRNA:   3'- -UGCGGUa---CCACa-UGUAAGCG-GCGU-CG- -5'
1559 3' -54 NC_001347.2 + 157791 0.7 0.889619
Target:  5'- cCGUaaccaGUGGUGUcaccaacggcagccGCggUCGCCGCAGUu -3'
miRNA:   3'- uGCGg----UACCACA--------------UGuaAGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.