Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1559 | 3' | -54 | NC_001347.2 | + | 153267 | 0.66 | 0.984826 |
Target: 5'- uCGCCGUGGuUGUugGc-CGaCGUAGCg -3' miRNA: 3'- uGCGGUACC-ACAugUaaGCgGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 77298 | 0.66 | 0.984826 |
Target: 5'- gGCGUCGUcGUacuuggGCGUggGCCGCGGCg -3' miRNA: 3'- -UGCGGUAcCAca----UGUAagCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 170761 | 0.66 | 0.984826 |
Target: 5'- -aGCCcgGGcg-GCGUguuuuugcgcaUCGCCGUGGCg -3' miRNA: 3'- ugCGGuaCCacaUGUA-----------AGCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 64814 | 0.66 | 0.985514 |
Target: 5'- cUGCUGUGGUGUugccuucugcugccCAUuguuuccucagUCGCCGuCAGCg -3' miRNA: 3'- uGCGGUACCACAu-------------GUA-----------AGCGGC-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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