Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1559 | 3' | -54 | NC_001347.2 | + | 39377 | 0.76 | 0.581339 |
Target: 5'- gACGCCGUGGcccgGCGUcgucguaGCCGCAGCa -3' miRNA: 3'- -UGCGGUACCaca-UGUAag-----CGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 137725 | 0.76 | 0.580335 |
Target: 5'- uCGCCAcauucgaUGGUGUACGcUCGCCGcCAGa -3' miRNA: 3'- uGCGGU-------ACCACAUGUaAGCGGC-GUCg -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 130210 | 0.81 | 0.331357 |
Target: 5'- aACGCCAUGG-GUACcuacCGCUGCGGCg -3' miRNA: 3'- -UGCGGUACCaCAUGuaa-GCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 195730 | 1.11 | 0.004624 |
Target: 5'- cACGCCAUGGUGUACAUUCGCCGCAGCu -3' miRNA: 3'- -UGCGGUACCACAUGUAAGCGGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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