miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 990 0.69 0.932449
Target:  5'- aGCGCCGUcacagcGGgcacugGUGCGagUGCUGCGGCu -3'
miRNA:   3'- -UGCGGUA------CCa-----CAUGUaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 1239 0.66 0.978844
Target:  5'- cGCGCCAUGc---GCAagUgGUCGCAGCg -3'
miRNA:   3'- -UGCGGUACcacaUGUa-AgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 2147 0.71 0.839952
Target:  5'- cACGCgGUGGUcGggGCGgaCGCgGCAGCa -3'
miRNA:   3'- -UGCGgUACCA-Ca-UGUaaGCGgCGUCG- -5'
1559 3' -54 NC_001347.2 + 6106 0.71 0.831779
Target:  5'- cACGCCGUGG-GUGCGUagaCUGCAGUu -3'
miRNA:   3'- -UGCGGUACCaCAUGUAagcGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 8342 0.69 0.921948
Target:  5'- aGCGCCGaGGguagGUGCGUUucggCGCCGU-GCa -3'
miRNA:   3'- -UGCGGUaCCa---CAUGUAA----GCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 16781 0.73 0.741576
Target:  5'- cGCGCCGgccucaugaaGGUGUACGUgcgUCGCCGCu-- -3'
miRNA:   3'- -UGCGGUa---------CCACAUGUA---AGCGGCGucg -5'
1559 3' -54 NC_001347.2 + 17113 0.69 0.921948
Target:  5'- cGCGCCAUGccgGU-CGUcCGCCGuCGGCc -3'
miRNA:   3'- -UGCGGUACca-CAuGUAaGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 18070 0.67 0.965249
Target:  5'- -aGCCGUcGGUGUACua--GCCGU-GCg -3'
miRNA:   3'- ugCGGUA-CCACAUGuaagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 37670 0.67 0.968363
Target:  5'- -aGCgGUGGgg-GCA-UCGuuGCAGCg -3'
miRNA:   3'- ugCGgUACCacaUGUaAGCggCGUCG- -5'
1559 3' -54 NC_001347.2 + 39377 0.76 0.581339
Target:  5'- gACGCCGUGGcccgGCGUcgucguaGCCGCAGCa -3'
miRNA:   3'- -UGCGGUACCaca-UGUAag-----CGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 47115 0.67 0.973985
Target:  5'- cAUGCCgAUGGUaugggcggcGgcgGCAaUgGCCGCGGCa -3'
miRNA:   3'- -UGCGG-UACCA---------Ca--UGUaAgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 48842 0.7 0.877905
Target:  5'- cGCGUCAgggcGGUGcgGCGUUCGCgUGCAcGCg -3'
miRNA:   3'- -UGCGGUa---CCACa-UGUAAGCG-GCGU-CG- -5'
1559 3' -54 NC_001347.2 + 52516 0.7 0.89162
Target:  5'- uGCGCCGUGGUGcUGgGUcagUGCCaGCGGg -3'
miRNA:   3'- -UGCGGUACCAC-AUgUAa--GCGG-CGUCg -5'
1559 3' -54 NC_001347.2 + 59824 0.66 0.982996
Target:  5'- uACGCCGUGGg--GCAgUUUGa-GCAGCc -3'
miRNA:   3'- -UGCGGUACCacaUGU-AAGCggCGUCG- -5'
1559 3' -54 NC_001347.2 + 63105 0.67 0.971272
Target:  5'- cCGCCGUGGc-------CGCCGCGGCc -3'
miRNA:   3'- uGCGGUACCacauguaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 63126 0.67 0.968363
Target:  5'- cCGCUGUGGccggaGUGCccgUCGCCGCAa- -3'
miRNA:   3'- uGCGGUACCa----CAUGua-AGCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 64814 0.66 0.985514
Target:  5'- cUGCUGUGGUGUugccuucugcugccCAUuguuuccucagUCGCCGuCAGCg -3'
miRNA:   3'- uGCGGUACCACAu-------------GUA-----------AGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 65203 0.67 0.963281
Target:  5'- uCGCCGgccGUGUACAcgugcguggacgaccUgUGCCGCGGCu -3'
miRNA:   3'- uGCGGUac-CACAUGU---------------AaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 68740 0.72 0.797384
Target:  5'- -gGCCGUGGagcgaGUGC---CGCCGCAGCc -3'
miRNA:   3'- ugCGGUACCa----CAUGuaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 77298 0.66 0.984826
Target:  5'- gGCGUCGUcGUacuuggGCGUggGCCGCGGCg -3'
miRNA:   3'- -UGCGGUAcCAca----UGUAagCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.