miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 78381 0.68 0.954634
Target:  5'- gGCGCCGUGGUGggaGgaC-CCGCGGg -3'
miRNA:   3'- -UGCGGUACCACaugUaaGcGGCGUCg -5'
1559 3' -54 NC_001347.2 + 84377 0.66 0.976507
Target:  5'- gGCGCgGaguccugGGUGUGuCGg--GCCGCGGCa -3'
miRNA:   3'- -UGCGgUa------CCACAU-GUaagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 86906 0.71 0.856503
Target:  5'- gGCGCCAUGcucgcccaggagACAggCGCCGUAGCu -3'
miRNA:   3'- -UGCGGUACcaca--------UGUaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 88341 0.75 0.662247
Target:  5'- -aGCCGUGGUa-ACcgUCGCCGCuGGCg -3'
miRNA:   3'- ugCGGUACCAcaUGuaAGCGGCG-UCG- -5'
1559 3' -54 NC_001347.2 + 89991 0.74 0.712286
Target:  5'- -aGCCcgGcGUGUACAccUGUCGCAGCa -3'
miRNA:   3'- ugCGGuaC-CACAUGUaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 94818 0.67 0.971272
Target:  5'- uGCGUCAUGaGguagcUGUACA--CGCCGCugAGCa -3'
miRNA:   3'- -UGCGGUAC-C-----ACAUGUaaGCGGCG--UCG- -5'
1559 3' -54 NC_001347.2 + 98048 0.68 0.942015
Target:  5'- aACGCCGcGGcg-GCAgcgGCCGCGGCu -3'
miRNA:   3'- -UGCGGUaCCacaUGUaagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 102416 0.71 0.831779
Target:  5'- aAC-CCAUGGgcgGUGCGgcgCGCCGCAuaccGCa -3'
miRNA:   3'- -UGcGGUACCa--CAUGUaa-GCGGCGU----CG- -5'
1559 3' -54 NC_001347.2 + 103230 0.67 0.971272
Target:  5'- gGCGCCAUGGaUGccgACGa--GCCGCuGUu -3'
miRNA:   3'- -UGCGGUACC-ACa--UGUaagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 106400 0.7 0.877196
Target:  5'- aACGCCGgacgagcUGGacaaGUACAgcggcUCGCCGCAGa -3'
miRNA:   3'- -UGCGGU-------ACCa---CAUGUa----AGCGGCGUCg -5'
1559 3' -54 NC_001347.2 + 107326 0.66 0.982996
Target:  5'- gGCGCCAgccgacccaGUG-GCGuUUCGCCuGCGGCu -3'
miRNA:   3'- -UGCGGUac-------CACaUGU-AAGCGG-CGUCG- -5'
1559 3' -54 NC_001347.2 + 115048 0.68 0.950655
Target:  5'- gACGCgAcGGUGUu--UUCGCCGuCGGUg -3'
miRNA:   3'- -UGCGgUaCCACAuguAAGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 130102 0.72 0.814907
Target:  5'- cGCGCCAUGGccuaugUGUGCucuuucUCGCgCGUGGCc -3'
miRNA:   3'- -UGCGGUACC------ACAUGua----AGCG-GCGUCG- -5'
1559 3' -54 NC_001347.2 + 130210 0.81 0.331357
Target:  5'- aACGCCAUGG-GUACcuacCGCUGCGGCg -3'
miRNA:   3'- -UGCGGUACCaCAUGuaa-GCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 137725 0.76 0.580335
Target:  5'- uCGCCAcauucgaUGGUGUACGcUCGCCGcCAGa -3'
miRNA:   3'- uGCGGU-------ACCACAUGUaAGCGGC-GUCg -5'
1559 3' -54 NC_001347.2 + 139629 0.76 0.591401
Target:  5'- cACGUCAUGGUGU-CAaUCGCUGC-GCu -3'
miRNA:   3'- -UGCGGUACCACAuGUaAGCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 140213 0.67 0.965249
Target:  5'- -gGCguUGGUGUgugGCAcgUGuCCGCAGCu -3'
miRNA:   3'- ugCGguACCACA---UGUaaGC-GGCGUCG- -5'
1559 3' -54 NC_001347.2 + 140309 0.66 0.981005
Target:  5'- gACGCuCAcgaaucaccUGGUGgGCug-CGCCGCGGg -3'
miRNA:   3'- -UGCG-GU---------ACCACaUGuaaGCGGCGUCg -5'
1559 3' -54 NC_001347.2 + 141239 0.68 0.954634
Target:  5'- uACGCCGUGGUGccCAUggagaucaagcUC-UCGCGGCu -3'
miRNA:   3'- -UGCGGUACCACauGUA-----------AGcGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 143007 0.69 0.910509
Target:  5'- -gGCgGUGGUGgaggAgGUUgCGCCGCAaGCg -3'
miRNA:   3'- ugCGgUACCACa---UgUAA-GCGGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.