miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 220105 0.67 0.968363
Target:  5'- uUGUaCGUGGUGUACGUUguggCGCUGCAa- -3'
miRNA:   3'- uGCG-GUACCACAUGUAA----GCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 210143 0.72 0.779276
Target:  5'- aGCGCCGUcuuucGUGCcgUCGCCGCAcuGCg -3'
miRNA:   3'- -UGCGGUAcca--CAUGuaAGCGGCGU--CG- -5'
1559 3' -54 NC_001347.2 + 208722 0.67 0.963281
Target:  5'- aGCGCCGUGGUcucggucgccaggcuGUGgGUcucgUUGCC-CAGCa -3'
miRNA:   3'- -UGCGGUACCA---------------CAUgUA----AGCGGcGUCG- -5'
1559 3' -54 NC_001347.2 + 199323 0.66 0.976507
Target:  5'- -gGCCGgcaugGGUaUGCAUUCGUUgagGCGGCg -3'
miRNA:   3'- ugCGGUa----CCAcAUGUAAGCGG---CGUCG- -5'
1559 3' -54 NC_001347.2 + 198852 0.66 0.976507
Target:  5'- cAUGCCccGGUGguucuCGUUgaGCCGCuGCa -3'
miRNA:   3'- -UGCGGuaCCACau---GUAAg-CGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 195730 1.11 0.004624
Target:  5'- cACGCCAUGGUGUACAUUCGCCGCAGCu -3'
miRNA:   3'- -UGCGGUACCACAUGUAAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 194466 0.66 0.976263
Target:  5'- cGCGCCAcggcgggucguUGGcucccgcUGUGCuggcCGCCGCuGCa -3'
miRNA:   3'- -UGCGGU-----------ACC-------ACAUGuaa-GCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 184805 0.66 0.982611
Target:  5'- aGCGCCGauuu-----UUCGCCGCAGCg -3'
miRNA:   3'- -UGCGGUaccacauguAAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 184228 0.67 0.973985
Target:  5'- uCGCUAgcGUGUcgcaGCGUUCGCCGCcguuGCc -3'
miRNA:   3'- uGCGGUacCACA----UGUAAGCGGCGu---CG- -5'
1559 3' -54 NC_001347.2 + 175059 0.68 0.937349
Target:  5'- gGCGCCGUcuucGGcGUGCAUccCGagaCGCGGCa -3'
miRNA:   3'- -UGCGGUA----CCaCAUGUAa-GCg--GCGUCG- -5'
1559 3' -54 NC_001347.2 + 172160 0.67 0.958389
Target:  5'- gACGCCGUcaGUGUGgGcUUCGC-GCGGCa -3'
miRNA:   3'- -UGCGGUAc-CACAUgU-AAGCGgCGUCG- -5'
1559 3' -54 NC_001347.2 + 170761 0.66 0.984826
Target:  5'- -aGCCcgGGcg-GCGUguuuuugcgcaUCGCCGUGGCg -3'
miRNA:   3'- ugCGGuaCCacaUGUA-----------AGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 167602 0.71 0.855734
Target:  5'- aGCGCCAUu-UGUGCGUagGCCGC-GCa -3'
miRNA:   3'- -UGCGGUAccACAUGUAagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 165973 0.67 0.965249
Target:  5'- -gGCCA-GGUGUGCGggUUCGuaGCGcGCa -3'
miRNA:   3'- ugCGGUaCCACAUGU--AAGCggCGU-CG- -5'
1559 3' -54 NC_001347.2 + 164822 0.66 0.976263
Target:  5'- -gGCCcagGGccgGCAgggccccUUCGCCGCAGCu -3'
miRNA:   3'- ugCGGua-CCacaUGU-------AAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 164683 0.68 0.942015
Target:  5'- gGCGCCGUGGccGUugccGCGUuagCGCCGCuuucGGUa -3'
miRNA:   3'- -UGCGGUACCa-CA----UGUAa--GCGGCG----UCG- -5'
1559 3' -54 NC_001347.2 + 157791 0.7 0.889619
Target:  5'- cCGUaaccaGUGGUGUcaccaacggcagccGCggUCGCCGCAGUu -3'
miRNA:   3'- uGCGg----UACCACA--------------UGuaAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 154915 0.66 0.978162
Target:  5'- aGCGCCGgcgGGUccuacGUugcuacugccggcgACGgcucCGCCGCAGCu -3'
miRNA:   3'- -UGCGGUa--CCA-----CA--------------UGUaa--GCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 154822 0.66 0.978844
Target:  5'- -gGCCAgcGGcGcGCAcagUCGCCGCAGUu -3'
miRNA:   3'- ugCGGUa-CCaCaUGUa--AGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 153849 0.67 0.958389
Target:  5'- cGCGCCAcguccucGUGUGCcg-CGCCgaGCGGCg -3'
miRNA:   3'- -UGCGGUac-----CACAUGuaaGCGG--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.