Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1559 | 3' | -54 | NC_001347.2 | + | 153267 | 0.66 | 0.984826 |
Target: 5'- uCGCCGUGGuUGUugGc-CGaCGUAGCg -3' miRNA: 3'- uGCGGUACC-ACAugUaaGCgGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 152222 | 0.66 | 0.976507 |
Target: 5'- uUGCaCAUGGUGc-----UGCCGCGGCg -3' miRNA: 3'- uGCG-GUACCACauguaaGCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 151879 | 0.71 | 0.847939 |
Target: 5'- gGCGCCc-GGUGUcCGgacggCGCCGCAGg -3' miRNA: 3'- -UGCGGuaCCACAuGUaa---GCGGCGUCg -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 149918 | 0.68 | 0.942015 |
Target: 5'- cCGCCGUGG-GUuuuaagcgGCAguaCGCCGCcGCu -3' miRNA: 3'- uGCGGUACCaCA--------UGUaa-GCGGCGuCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 143007 | 0.69 | 0.910509 |
Target: 5'- -gGCgGUGGUGgaggAgGUUgCGCCGCAaGCg -3' miRNA: 3'- ugCGgUACCACa---UgUAA-GCGGCGU-CG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 141239 | 0.68 | 0.954634 |
Target: 5'- uACGCCGUGGUGccCAUggagaucaagcUC-UCGCGGCu -3' miRNA: 3'- -UGCGGUACCACauGUA-----------AGcGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 140309 | 0.66 | 0.981005 |
Target: 5'- gACGCuCAcgaaucaccUGGUGgGCug-CGCCGCGGg -3' miRNA: 3'- -UGCG-GU---------ACCACaUGuaaGCGGCGUCg -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 140213 | 0.67 | 0.965249 |
Target: 5'- -gGCguUGGUGUgugGCAcgUGuCCGCAGCu -3' miRNA: 3'- ugCGguACCACA---UGUaaGC-GGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 139629 | 0.76 | 0.591401 |
Target: 5'- cACGUCAUGGUGU-CAaUCGCUGC-GCu -3' miRNA: 3'- -UGCGGUACCACAuGUaAGCGGCGuCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 137725 | 0.76 | 0.580335 |
Target: 5'- uCGCCAcauucgaUGGUGUACGcUCGCCGcCAGa -3' miRNA: 3'- uGCGGU-------ACCACAUGUaAGCGGC-GUCg -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 130210 | 0.81 | 0.331357 |
Target: 5'- aACGCCAUGG-GUACcuacCGCUGCGGCg -3' miRNA: 3'- -UGCGGUACCaCAUGuaa-GCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 130102 | 0.72 | 0.814907 |
Target: 5'- cGCGCCAUGGccuaugUGUGCucuuucUCGCgCGUGGCc -3' miRNA: 3'- -UGCGGUACC------ACAUGua----AGCG-GCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 115048 | 0.68 | 0.950655 |
Target: 5'- gACGCgAcGGUGUu--UUCGCCGuCGGUg -3' miRNA: 3'- -UGCGgUaCCACAuguAAGCGGC-GUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 107326 | 0.66 | 0.982996 |
Target: 5'- gGCGCCAgccgacccaGUG-GCGuUUCGCCuGCGGCu -3' miRNA: 3'- -UGCGGUac-------CACaUGU-AAGCGG-CGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 106400 | 0.7 | 0.877196 |
Target: 5'- aACGCCGgacgagcUGGacaaGUACAgcggcUCGCCGCAGa -3' miRNA: 3'- -UGCGGU-------ACCa---CAUGUa----AGCGGCGUCg -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 103230 | 0.67 | 0.971272 |
Target: 5'- gGCGCCAUGGaUGccgACGa--GCCGCuGUu -3' miRNA: 3'- -UGCGGUACC-ACa--UGUaagCGGCGuCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 102416 | 0.71 | 0.831779 |
Target: 5'- aAC-CCAUGGgcgGUGCGgcgCGCCGCAuaccGCa -3' miRNA: 3'- -UGcGGUACCa--CAUGUaa-GCGGCGU----CG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 98048 | 0.68 | 0.942015 |
Target: 5'- aACGCCGcGGcg-GCAgcgGCCGCGGCu -3' miRNA: 3'- -UGCGGUaCCacaUGUaagCGGCGUCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 94818 | 0.67 | 0.971272 |
Target: 5'- uGCGUCAUGaGguagcUGUACA--CGCCGCugAGCa -3' miRNA: 3'- -UGCGGUAC-C-----ACAUGUaaGCGGCG--UCG- -5' |
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1559 | 3' | -54 | NC_001347.2 | + | 89991 | 0.74 | 0.712286 |
Target: 5'- -aGCCcgGcGUGUACAccUGUCGCAGCa -3' miRNA: 3'- ugCGGuaC-CACAUGUaaGCGGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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