miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 3' -54 NC_001347.2 + 184805 0.66 0.982611
Target:  5'- aGCGCCGauuu-----UUCGCCGCAGCg -3'
miRNA:   3'- -UGCGGUaccacauguAAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 153267 0.66 0.984826
Target:  5'- uCGCCGUGGuUGUugGc-CGaCGUAGCg -3'
miRNA:   3'- uGCGGUACC-ACAugUaaGCgGCGUCG- -5'
1559 3' -54 NC_001347.2 + 107326 0.66 0.982996
Target:  5'- gGCGCCAgccgacccaGUG-GCGuUUCGCCuGCGGCu -3'
miRNA:   3'- -UGCGGUac-------CACaUGU-AAGCGG-CGUCG- -5'
1559 3' -54 NC_001347.2 + 64814 0.66 0.985514
Target:  5'- cUGCUGUGGUGUugccuucugcugccCAUuguuuccucagUCGCCGuCAGCg -3'
miRNA:   3'- uGCGGUACCACAu-------------GUA-----------AGCGGC-GUCG- -5'
1559 3' -54 NC_001347.2 + 77298 0.66 0.984826
Target:  5'- gGCGUCGUcGUacuuggGCGUggGCCGCGGCg -3'
miRNA:   3'- -UGCGGUAcCAca----UGUAagCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 152222 0.66 0.976507
Target:  5'- uUGCaCAUGGUGc-----UGCCGCGGCg -3'
miRNA:   3'- uGCG-GUACCACauguaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 164822 0.66 0.976263
Target:  5'- -gGCCcagGGccgGCAgggccccUUCGCCGCAGCu -3'
miRNA:   3'- ugCGGua-CCacaUGU-------AAGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 208722 0.67 0.963281
Target:  5'- aGCGCCGUGGUcucggucgccaggcuGUGgGUcucgUUGCC-CAGCa -3'
miRNA:   3'- -UGCGGUACCA---------------CAUgUA----AGCGGcGUCG- -5'
1559 3' -54 NC_001347.2 + 18070 0.67 0.965249
Target:  5'- -aGCCGUcGGUGUACua--GCCGU-GCg -3'
miRNA:   3'- ugCGGUA-CCACAUGuaagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 165973 0.67 0.965249
Target:  5'- -gGCCA-GGUGUGCGggUUCGuaGCGcGCa -3'
miRNA:   3'- ugCGGUaCCACAUGU--AAGCggCGU-CG- -5'
1559 3' -54 NC_001347.2 + 140213 0.67 0.965249
Target:  5'- -gGCguUGGUGUgugGCAcgUGuCCGCAGCu -3'
miRNA:   3'- ugCGguACCACA---UGUaaGC-GGCGUCG- -5'
1559 3' -54 NC_001347.2 + 37670 0.67 0.968363
Target:  5'- -aGCgGUGGgg-GCA-UCGuuGCAGCg -3'
miRNA:   3'- ugCGgUACCacaUGUaAGCggCGUCG- -5'
1559 3' -54 NC_001347.2 + 220105 0.67 0.968363
Target:  5'- uUGUaCGUGGUGUACGUUguggCGCUGCAa- -3'
miRNA:   3'- uGCG-GUACCACAUGUAA----GCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 94818 0.67 0.971272
Target:  5'- uGCGUCAUGaGguagcUGUACA--CGCCGCugAGCa -3'
miRNA:   3'- -UGCGGUAC-C-----ACAUGUaaGCGGCG--UCG- -5'
1559 3' -54 NC_001347.2 + 63126 0.67 0.968363
Target:  5'- cCGCUGUGGccggaGUGCccgUCGCCGCAa- -3'
miRNA:   3'- uGCGGUACCa----CAUGua-AGCGGCGUcg -5'
1559 3' -54 NC_001347.2 + 63105 0.67 0.971272
Target:  5'- cCGCCGUGGc-------CGCCGCGGCc -3'
miRNA:   3'- uGCGGUACCacauguaaGCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 103230 0.67 0.971272
Target:  5'- gGCGCCAUGGaUGccgACGa--GCCGCuGUu -3'
miRNA:   3'- -UGCGGUACC-ACa--UGUaagCGGCGuCG- -5'
1559 3' -54 NC_001347.2 + 184228 0.67 0.973985
Target:  5'- uCGCUAgcGUGUcgcaGCGUUCGCCGCcguuGCc -3'
miRNA:   3'- uGCGGUacCACA----UGUAAGCGGCGu---CG- -5'
1559 3' -54 NC_001347.2 + 47115 0.67 0.973985
Target:  5'- cAUGCCgAUGGUaugggcggcGgcgGCAaUgGCCGCGGCa -3'
miRNA:   3'- -UGCGG-UACCA---------Ca--UGUaAgCGGCGUCG- -5'
1559 3' -54 NC_001347.2 + 194466 0.66 0.976263
Target:  5'- cGCGCCAcggcgggucguUGGcucccgcUGUGCuggcCGCCGCuGCa -3'
miRNA:   3'- -UGCGGU-----------ACC-------ACAUGuaa-GCGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.