miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 75969 0.66 0.967444
Target:  5'- cGgGCUGCGGCGaguCGcccaGCGGGU-CGGCc -3'
miRNA:   3'- -CgCGAUGCCGCgu-GC----CGUUCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 177534 0.66 0.967444
Target:  5'- uGCGCUcaccCGGCGUucuCGGCAccGGuUACGcCg -3'
miRNA:   3'- -CGCGAu---GCCGCGu--GCCGU--UC-AUGCuG- -5'
1559 5' -55.7 NC_001347.2 + 26322 0.66 0.967141
Target:  5'- cGCGCUGguuUGGCuggguuaccccucGCugGGCuacAAGUgcaGCGACg -3'
miRNA:   3'- -CGCGAU---GCCG-------------CGugCCG---UUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 38996 0.66 0.966529
Target:  5'- -gGCUGCGGgGUccaccucgugcaccACGGUAgccaccAGUACGAUc -3'
miRNA:   3'- cgCGAUGCCgCG--------------UGCCGU------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 148599 0.66 0.964322
Target:  5'- -aGCgGCGGCGUgacCGGCG-GUGCGGu -3'
miRNA:   3'- cgCGaUGCCGCGu--GCCGUuCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 168991 0.66 0.964322
Target:  5'- cGCGCUGCucaucCGCAUGGagaCGGGuUGCGACu -3'
miRNA:   3'- -CGCGAUGcc---GCGUGCC---GUUC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 144636 0.66 0.964322
Target:  5'- uGgGCaggACGGCG-ACGGCAgcgAGaACGGCu -3'
miRNA:   3'- -CgCGa--UGCCGCgUGCCGU---UCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 172710 0.66 0.964322
Target:  5'- gGCGCUGCGGCugaaGC-CGuaCAAG-ACGGCu -3'
miRNA:   3'- -CGCGAUGCCG----CGuGCc-GUUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 194725 0.66 0.964322
Target:  5'- cGUGCUGgGGCuCucguuCGGCGAGUuuuuugagaACGGCc -3'
miRNA:   3'- -CGCGAUgCCGcGu----GCCGUUCA---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 228232 0.66 0.964322
Target:  5'- aGCGCcaugUGCGGguCGUuuCGGCGugaAGUugGACg -3'
miRNA:   3'- -CGCG----AUGCC--GCGu-GCCGU---UCAugCUG- -5'
1559 5' -55.7 NC_001347.2 + 38056 0.66 0.964322
Target:  5'- aGCGCgcccagcACGcccGCGCGCaGaAAGUGCGACa -3'
miRNA:   3'- -CGCGa------UGC---CGCGUGcCgUUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 19117 0.66 0.963998
Target:  5'- cGCGUuccguacaacgaaUGCGGCGUcgaauuaccggGCGGCGAuagcaGCGACg -3'
miRNA:   3'- -CGCG-------------AUGCCGCG-----------UGCCGUUca---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 185121 0.66 0.963998
Target:  5'- uGCuGUUGCGGCGCgagcagccgccggGCGGCAcgggcaAGUGCu-- -3'
miRNA:   3'- -CG-CGAUGCCGCG-------------UGCCGU------UCAUGcug -5'
1559 5' -55.7 NC_001347.2 + 228612 0.66 0.960995
Target:  5'- cGCGU--UGGCGCGCcaacaGUAAGgugACGACa -3'
miRNA:   3'- -CGCGauGCCGCGUGc----CGUUCa--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 51288 0.66 0.960995
Target:  5'- cCGCUACaacGCGCgccugacccGCGGCuacGUACGAUa -3'
miRNA:   3'- cGCGAUGc--CGCG---------UGCCGuu-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 107351 0.66 0.960995
Target:  5'- cGC-CUGCGGCuGCGacGCGaaacGGUGCGACg -3'
miRNA:   3'- -CGcGAUGCCG-CGUgcCGU----UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1499 0.66 0.960995
Target:  5'- gGCGCUG-GGCGC-CGGguuccgcguguuCGuGUACGACc -3'
miRNA:   3'- -CGCGAUgCCGCGuGCC------------GUuCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 200262 0.66 0.960995
Target:  5'- -gGCUAgccUGGCGCucACGGCcGAGUuCGGCc -3'
miRNA:   3'- cgCGAU---GCCGCG--UGCCG-UUCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 136285 0.66 0.960652
Target:  5'- cCGCcGCGGCccaugcccgGCACGGggcucgcgcucccUAGGUGCGGCc -3'
miRNA:   3'- cGCGaUGCCG---------CGUGCC-------------GUUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 93206 0.66 0.959607
Target:  5'- aGCGCUcgcGCuGGCGacgagcucgcugaGCGGCAGcgGCGGCa -3'
miRNA:   3'- -CGCGA---UG-CCGCg------------UGCCGUUcaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.