miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 153235 0.67 0.926586
Target:  5'- gGCGCg--GGCGCGCgucGGCcGGcgACGGCg -3'
miRNA:   3'- -CGCGaugCCGCGUG---CCGuUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 168530 0.67 0.926586
Target:  5'- cUGCUcgGCGGCGUACaGCGGGUcGCG-Cg -3'
miRNA:   3'- cGCGA--UGCCGCGUGcCGUUCA-UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 167695 0.67 0.931171
Target:  5'- cGCGUcGCGGCGUAUG-CAAGUggucuuccagcacGCGAUc -3'
miRNA:   3'- -CGCGaUGCCGCGUGCcGUUCA-------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 140786 0.67 0.926586
Target:  5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3'
miRNA:   3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 87644 0.67 0.926586
Target:  5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3'
miRNA:   3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 54664 0.67 0.926586
Target:  5'- aGCGCUuauaucguuuACGGgGgAUGGCGAuagACGACu -3'
miRNA:   3'- -CGCGA----------UGCCgCgUGCCGUUca-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 190805 0.67 0.93364
Target:  5'- cGCGCUGC-GCGCucguCaGCAGGUagaaggaaaaagcgcGCGGCa -3'
miRNA:   3'- -CGCGAUGcCGCGu---GcCGUUCA---------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 84909 0.67 0.936526
Target:  5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3'
miRNA:   3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 193983 0.67 0.945564
Target:  5'- cGUGUacGCGGCGCugGugggGCAggauaaguuGGUGCGGCu -3'
miRNA:   3'- -CGCGa-UGCCGCGugC----CGU---------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 100308 0.67 0.945564
Target:  5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3'
miRNA:   3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 86009 0.67 0.945564
Target:  5'- cCGCcGCGGCGCcCGGCAgacAGccGCuGACg -3'
miRNA:   3'- cGCGaUGCCGCGuGCCGU---UCa-UG-CUG- -5'
1559 5' -55.7 NC_001347.2 + 93437 0.67 0.945564
Target:  5'- cGCGC-ACGGCGCGaaucaGCAcGUAcuCGACg -3'
miRNA:   3'- -CGCGaUGCCGCGUgc---CGUuCAU--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 189420 0.67 0.945564
Target:  5'- -aGCcagaaacCGGUGCugGGCAAGcgagucGCGACg -3'
miRNA:   3'- cgCGau-----GCCGCGugCCGUUCa-----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 142566 0.67 0.945564
Target:  5'- -gGCUgGCGGCGU-CGGCGGGagcagcggggGCGGCg -3'
miRNA:   3'- cgCGA-UGCCGCGuGCCGUUCa---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 107425 0.67 0.945564
Target:  5'- aCGCUcCGGCGCGgCGGaCGAGg--GACu -3'
miRNA:   3'- cGCGAuGCCGCGU-GCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 229524 0.67 0.941158
Target:  5'- gGUGUguCGGgGCGCGGCGGGUGgGu- -3'
miRNA:   3'- -CGCGauGCCgCGUGCCGUUCAUgCug -5'
1559 5' -55.7 NC_001347.2 + 76797 0.67 0.936526
Target:  5'- -gGCUAaCGGCGCugucagccaGCGGCAcGUGCuugcuGACg -3'
miRNA:   3'- cgCGAU-GCCGCG---------UGCCGUuCAUG-----CUG- -5'
1559 5' -55.7 NC_001347.2 + 67024 0.67 0.941158
Target:  5'- -gGCUGCGGagacaGCuGCGGCG-GUccucGCGACg -3'
miRNA:   3'- cgCGAUGCCg----CG-UGCCGUuCA----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 65728 0.67 0.936526
Target:  5'- gGCGgUggAgGGCGCGCGGCAacucgagauGGUGuaccCGGCa -3'
miRNA:   3'- -CGCgA--UgCCGCGUGCCGU---------UCAU----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 138957 0.67 0.945564
Target:  5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3'
miRNA:   3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.