miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 197688 0.72 0.744013
Target:  5'- cGCGCUGCGcagggcagacuGCGuCACGGCAaccgcucgGGccUGCGACg -3'
miRNA:   3'- -CGCGAUGC-----------CGC-GUGCCGU--------UC--AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 82317 0.71 0.781
Target:  5'- aGCGCUGCGGUuucCACGcccaguGCcGGUGCGGCc -3'
miRNA:   3'- -CGCGAUGCCGc--GUGC------CGuUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1588 0.71 0.753421
Target:  5'- -gGC-ACGGCGCG-GGCGagguGGUGCGGCu -3'
miRNA:   3'- cgCGaUGCCGCGUgCCGU----UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 76624 0.71 0.762727
Target:  5'- gGCgGCUGCGGC-CGCGGCgGAGgccgaaGCGGCc -3'
miRNA:   3'- -CG-CGAUGCCGcGUGCCG-UUCa-----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 178080 0.71 0.753421
Target:  5'- gGCGU--CGGCGUugGGCAAGgugGCG-Cu -3'
miRNA:   3'- -CGCGauGCCGCGugCCGUUCa--UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 104442 0.71 0.762727
Target:  5'- cCGCcACGGUGCACGGaCAAaaggccgcGUGCGAa -3'
miRNA:   3'- cGCGaUGCCGCGUGCC-GUU--------CAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 112849 0.71 0.798766
Target:  5'- cCGCUACGGCGC-CGGgAuacAUGACg -3'
miRNA:   3'- cGCGAUGCCGCGuGCCgUucaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 39163 0.71 0.780098
Target:  5'- cGCGCUGCGaccacuuGCGCAUGGC----GCGGCc -3'
miRNA:   3'- -CGCGAUGC-------CGCGUGCCGuucaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 126646 0.71 0.789951
Target:  5'- gGCGCUGgcacGCGCGCGGUugcucGAGUAcCGGCg -3'
miRNA:   3'- -CGCGAUgc--CGCGUGCCG-----UUCAU-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 1900 0.71 0.771922
Target:  5'- uGUGCUGCggcuggcuGGCGCugGGCGcGGUGCuGCc -3'
miRNA:   3'- -CGCGAUG--------CCGCGugCCGU-UCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 15386 0.7 0.824324
Target:  5'- aGCGCgaGCGGCGUauucuGCaGCAgcAGUAUGACu -3'
miRNA:   3'- -CGCGa-UGCCGCG-----UGcCGU--UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 185470 0.7 0.832522
Target:  5'- uGCGCcggACGGCGUugugGCGcGCAGGggcucCGACg -3'
miRNA:   3'- -CGCGa--UGCCGCG----UGC-CGUUCau---GCUG- -5'
1559 5' -55.7 NC_001347.2 + 2182 0.7 0.832522
Target:  5'- gGCGCcgACGGUG-AUGGUggGUuCGACa -3'
miRNA:   3'- -CGCGa-UGCCGCgUGCCGuuCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 18736 0.7 0.848391
Target:  5'- cCGCUucgaccGCGGauuGCGCGGCGAGUGuCGGu -3'
miRNA:   3'- cGCGA------UGCCg--CGUGCCGUUCAU-GCUg -5'
1559 5' -55.7 NC_001347.2 + 150613 0.7 0.83171
Target:  5'- gGCGUUuccaacgacaaucACGGCGC-CGGCGGuacUGCGGCg -3'
miRNA:   3'- -CGCGA-------------UGCCGCGuGCCGUUc--AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 2091 0.7 0.848391
Target:  5'- cGCaGCcgUACGGCGCcgcCGGCGGGggcGCGAUu -3'
miRNA:   3'- -CG-CG--AUGCCGCGu--GCCGUUCa--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 228559 0.7 0.815961
Target:  5'- uGCGCgaaaGCcuGUGcCGCGGCAGcGUACGACg -3'
miRNA:   3'- -CGCGa---UGc-CGC-GUGCCGUU-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 77935 0.69 0.870066
Target:  5'- uGCGCUcggaGCGGCuggaggcgcagcuGCGCGGCAAGcACa-- -3'
miRNA:   3'- -CGCGA----UGCCG-------------CGUGCCGUUCaUGcug -5'
1559 5' -55.7 NC_001347.2 + 219 0.69 0.884705
Target:  5'- gGUGUgucgGCGGUguGCGCGGCcucgggguGUGCGGCu -3'
miRNA:   3'- -CGCGa---UGCCG--CGUGCCGuu------CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 139668 0.69 0.877151
Target:  5'- uGUGCUgaucgagGCGGCGuUGCGGCAGuuuGUgcACGACa -3'
miRNA:   3'- -CGCGA-------UGCCGC-GUGCCGUU---CA--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.