miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 219 0.69 0.884705
Target:  5'- gGUGUgucgGCGGUguGCGCGGCcucgggguGUGCGGCu -3'
miRNA:   3'- -CGCGa---UGCCG--CGUGCCGuu------CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 139668 0.69 0.877151
Target:  5'- uGUGCUgaucgagGCGGCGuUGCGGCAGuuuGUgcACGACa -3'
miRNA:   3'- -CGCGA-------UGCCGC-GUGCCGUU---CA--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 97909 0.69 0.863516
Target:  5'- gGCGUcggGCGGCGgcgguaacaCACGGCGaaucAGuUGCGACa -3'
miRNA:   3'- -CGCGa--UGCCGC---------GUGCCGU----UC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 77509 0.69 0.884705
Target:  5'- aCGgUGCGGCGCGUGGCcgagGAGUggaaguugcacGCGGCg -3'
miRNA:   3'- cGCgAUGCCGCGUGCCG----UUCA-----------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 152378 0.68 0.909975
Target:  5'- gGgGCUGCGuCGCcugcgACGGCGGGUggagaugagGCGGCg -3'
miRNA:   3'- -CgCGAUGCcGCG-----UGCCGUUCA---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 191257 0.68 0.903988
Target:  5'- -gGC-ACGGCGUAaugcgGGCAGgcGUGCGGCa -3'
miRNA:   3'- cgCGaUGCCGCGUg----CCGUU--CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 176630 0.68 0.89135
Target:  5'- -gGCccagACGGUGCACGGC----GCGGCg -3'
miRNA:   3'- cgCGa---UGCCGCGUGCCGuucaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 79301 0.68 0.903377
Target:  5'- aGUGCUcgacuuuACGGUGCGCGGCGacaAGcUGUGGCu -3'
miRNA:   3'- -CGCGA-------UGCCGCGUGCCGU---UC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 166762 0.68 0.923427
Target:  5'- uGCGCUACGGaGCGCGccaugagcucggccaGCAGGuccacaUugGGCg -3'
miRNA:   3'- -CGCGAUGCCgCGUGC---------------CGUUC------AugCUG- -5'
1559 5' -55.7 NC_001347.2 + 36619 0.68 0.908202
Target:  5'- gGUGUUGCuguauggacuggaaGGCGCACGuuGAGUACGcGCa -3'
miRNA:   3'- -CGCGAUG--------------CCGCGUGCcgUUCAUGC-UG- -5'
1559 5' -55.7 NC_001347.2 + 228360 0.68 0.909975
Target:  5'- uGCGaUGCGGUGgAugUGGCGGgGUGCGGCg -3'
miRNA:   3'- -CGCgAUGCCGCgU--GCCGUU-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 173537 0.68 0.909975
Target:  5'- cGCGUgGCGGCG-GCGGUGGugGCGGCa -3'
miRNA:   3'- -CGCGaUGCCGCgUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 99303 0.68 0.903988
Target:  5'- gGCGCguaACGcUGCACGGCuAGauguuUACGACg -3'
miRNA:   3'- -CGCGa--UGCcGCGUGCCGuUC-----AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 18351 0.68 0.89135
Target:  5'- aCGCUGCGGC-CGUGGCcAAG-ACGGCc -3'
miRNA:   3'- cGCGAUGCCGcGUGCCG-UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 225552 0.68 0.897779
Target:  5'- gGCGCU-CGGaCGgAUGGgGAGaACGGCg -3'
miRNA:   3'- -CGCGAuGCC-GCgUGCCgUUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 157988 0.68 0.898409
Target:  5'- cGCGCggaggaggcucgacgGCGGCaGCuGCGGCG-GUAgGACa -3'
miRNA:   3'- -CGCGa--------------UGCCG-CG-UGCCGUuCAUgCUG- -5'
1559 5' -55.7 NC_001347.2 + 140329 0.68 0.903988
Target:  5'- uGgGCUGCGcCGCGgGGCu-GUGCGAg -3'
miRNA:   3'- -CgCGAUGCcGCGUgCCGuuCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 1797 0.68 0.903988
Target:  5'- cUGCUG-GGCGCGUGGCAggagcuggcgcAGUACGAg -3'
miRNA:   3'- cGCGAUgCCGCGUGCCGU-----------UCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 101437 0.68 0.909975
Target:  5'- gGUGCUGCGcGCGCuuaaaaacACGGCcgacgccaugGAGcGCGGCu -3'
miRNA:   3'- -CGCGAUGC-CGCG--------UGCCG----------UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158602 0.68 0.909975
Target:  5'- cUGCUGUGcGCGCGCugucagacgGGCGAGUaccGCGACa -3'
miRNA:   3'- cGCGAUGC-CGCGUG---------CCGUUCA---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.