miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 75030 0.68 0.91798
Target:  5'- aCGUUACGGCGauuguagguaacgaGCGGCAAcGUggcgaaGCGACc -3'
miRNA:   3'- cGCGAUGCCGCg-------------UGCCGUU-CA------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 95473 0.68 0.921275
Target:  5'- cGCGCgucacGCGGCGC-CGGU--GU-CGGCg -3'
miRNA:   3'- -CGCGa----UGCCGCGuGCCGuuCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 59116 0.68 0.890695
Target:  5'- -aGCUGCGGCcaucagaGCAgCGGCGGG-GCGAg -3'
miRNA:   3'- cgCGAUGCCG-------CGU-GCCGUUCaUGCUg -5'
1559 5' -55.7 NC_001347.2 + 79301 0.68 0.903377
Target:  5'- aGUGCUcgacuuuACGGUGCGCGGCGacaAGcUGUGGCu -3'
miRNA:   3'- -CGCGA-------UGCCGCGUGCCGU---UC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 166762 0.68 0.923427
Target:  5'- uGCGCUACGGaGCGCGccaugagcucggccaGCAGGuccacaUugGGCg -3'
miRNA:   3'- -CGCGAUGCCgCGUGC---------------CGUUC------AugCUG- -5'
1559 5' -55.7 NC_001347.2 + 38322 0.67 0.93167
Target:  5'- gGCGCcgUACGGCuGCGgaGGCAcaGGUACaGCg -3'
miRNA:   3'- -CGCG--AUGCCG-CGUg-CCGU--UCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 152465 0.67 0.93167
Target:  5'- cGUGCaACGGCGaCGCGGuUAAGggaGACc -3'
miRNA:   3'- -CGCGaUGCCGC-GUGCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 17340 0.67 0.93167
Target:  5'- cGCGCgUAUGGcCGC-CGGCcacGAGaGCGAUg -3'
miRNA:   3'- -CGCG-AUGCC-GCGuGCCG---UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 190805 0.67 0.93364
Target:  5'- cGCGCUGC-GCGCucguCaGCAGGUagaaggaaaaagcgcGCGGCa -3'
miRNA:   3'- -CGCGAUGcCGCGu---GcCGUUCA---------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 84909 0.67 0.936526
Target:  5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3'
miRNA:   3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 67024 0.67 0.941158
Target:  5'- -gGCUGCGGagacaGCuGCGGCG-GUccucGCGACg -3'
miRNA:   3'- cgCGAUGCCg----CG-UGCCGUuCA----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158097 0.67 0.93167
Target:  5'- cGCGCUgcGCGGCgGCcucauCGGCAGcGUcauCGACc -3'
miRNA:   3'- -CGCGA--UGCCG-CGu----GCCGUU-CAu--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 159285 0.67 0.93167
Target:  5'- gGUGCUgGCGGCGCcgggcgccACGGCcacAAGUucaucuCGGCa -3'
miRNA:   3'- -CGCGA-UGCCGCG--------UGCCG---UUCAu-----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 31591 0.67 0.93167
Target:  5'- -aGCUGCGuCGUcaaggACGGCGuGUugGACg -3'
miRNA:   3'- cgCGAUGCcGCG-----UGCCGUuCAugCUG- -5'
1559 5' -55.7 NC_001347.2 + 153235 0.67 0.926586
Target:  5'- gGCGCg--GGCGCGCgucGGCcGGcgACGGCg -3'
miRNA:   3'- -CGCGaugCCGCGUG---CCGuUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 168530 0.67 0.926586
Target:  5'- cUGCUcgGCGGCGUACaGCGGGUcGCG-Cg -3'
miRNA:   3'- cGCGA--UGCCGCGUGcCGUUCA-UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 167695 0.67 0.931171
Target:  5'- cGCGUcGCGGCGUAUG-CAAGUggucuuccagcacGCGAUc -3'
miRNA:   3'- -CGCGaUGCCGCGUGCcGUUCA-------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 140786 0.67 0.926586
Target:  5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3'
miRNA:   3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 87644 0.67 0.926586
Target:  5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3'
miRNA:   3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 65728 0.67 0.936526
Target:  5'- gGCGgUggAgGGCGCGCGGCAacucgagauGGUGuaccCGGCa -3'
miRNA:   3'- -CGCgA--UgCCGCGUGCCGU---------UCAU----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.