miRNA display CGI


Results 81 - 100 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 87644 0.67 0.926586
Target:  5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3'
miRNA:   3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 140786 0.67 0.926586
Target:  5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3'
miRNA:   3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 167695 0.67 0.931171
Target:  5'- cGCGUcGCGGCGUAUG-CAAGUggucuuccagcacGCGAUc -3'
miRNA:   3'- -CGCGaUGCCGCGUGCcGUUCA-------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 168530 0.67 0.926586
Target:  5'- cUGCUcgGCGGCGUACaGCGGGUcGCG-Cg -3'
miRNA:   3'- cGCGA--UGCCGCGUGcCGUUCA-UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 153235 0.67 0.926586
Target:  5'- gGCGCg--GGCGCGCgucGGCcGGcgACGGCg -3'
miRNA:   3'- -CGCGaugCCGCGUG---CCGuUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 31591 0.67 0.93167
Target:  5'- -aGCUGCGuCGUcaaggACGGCGuGUugGACg -3'
miRNA:   3'- cgCGAUGCcGCG-----UGCCGUuCAugCUG- -5'
1559 5' -55.7 NC_001347.2 + 38322 0.67 0.93167
Target:  5'- gGCGCcgUACGGCuGCGgaGGCAcaGGUACaGCg -3'
miRNA:   3'- -CGCG--AUGCCG-CGUg-CCGU--UCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 159285 0.67 0.93167
Target:  5'- gGUGCUgGCGGCGCcgggcgccACGGCcacAAGUucaucuCGGCa -3'
miRNA:   3'- -CGCGA-UGCCGCG--------UGCCG---UUCAu-----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 100308 0.67 0.945564
Target:  5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3'
miRNA:   3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 152465 0.67 0.93167
Target:  5'- cGUGCaACGGCGaCGCGGuUAAGggaGACc -3'
miRNA:   3'- -CGCGaUGCCGC-GUGCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 17340 0.67 0.93167
Target:  5'- cGCGCgUAUGGcCGC-CGGCcacGAGaGCGAUg -3'
miRNA:   3'- -CGCG-AUGCC-GCGuGCCG---UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 19117 0.66 0.963998
Target:  5'- cGCGUuccguacaacgaaUGCGGCGUcgaauuaccggGCGGCGAuagcaGCGACg -3'
miRNA:   3'- -CGCG-------------AUGCCGCG-----------UGCCGUUca---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 51288 0.66 0.960995
Target:  5'- cCGCUACaacGCGCgccugacccGCGGCuacGUACGAUa -3'
miRNA:   3'- cGCGAUGc--CGCG---------UGCCGuu-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 194725 0.66 0.964322
Target:  5'- cGUGCUGgGGCuCucguuCGGCGAGUuuuuugagaACGGCc -3'
miRNA:   3'- -CGCGAUgCCGcGu----GCCGUUCA---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 228612 0.66 0.960995
Target:  5'- cGCGU--UGGCGCGCcaacaGUAAGgugACGACa -3'
miRNA:   3'- -CGCGauGCCGCGUGc----CGUUCa--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 88680 0.66 0.957461
Target:  5'- gGCGC--CGGCGCGCccuGCuGGgACGACg -3'
miRNA:   3'- -CGCGauGCCGCGUGc--CGuUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 40460 0.66 0.953713
Target:  5'- aCGCUGCcuGCGCACuGCcGGUGCGuguCg -3'
miRNA:   3'- cGCGAUGc-CGCGUGcCGuUCAUGCu--G- -5'
1559 5' -55.7 NC_001347.2 + 99532 0.66 0.953713
Target:  5'- cGCGauCUGCGGCcgggucGCGCGGCAG---UGACa -3'
miRNA:   3'- -CGC--GAUGCCG------CGUGCCGUUcauGCUG- -5'
1559 5' -55.7 NC_001347.2 + 142503 0.66 0.957461
Target:  5'- uUGCUuCGGCGUgccCGGCGAG-ACGGg -3'
miRNA:   3'- cGCGAuGCCGCGu--GCCGUUCaUGCUg -5'
1559 5' -55.7 NC_001347.2 + 140042 0.66 0.949748
Target:  5'- gGCGCgGCaucccaGCGC-CGGCG-GUACGGCc -3'
miRNA:   3'- -CGCGaUGc-----CGCGuGCCGUuCAUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.