miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 195775 1.12 0.003138
Target:  5'- uGCGCUACGGCGCACGGCAAGUACGACa -3'
miRNA:   3'- -CGCGAUGCCGCGUGCCGUUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 194455 0.78 0.38519
Target:  5'- aGCGCUACGuGCGCgccACGGCGGGUcguUGGCu -3'
miRNA:   3'- -CGCGAUGC-CGCG---UGCCGUUCAu--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 65156 0.78 0.38519
Target:  5'- cGCGCUggaugACGGUgauGCGCGGCuacagcGAGUGCGGCg -3'
miRNA:   3'- -CGCGA-----UGCCG---CGUGCCG------UUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1937 0.78 0.410012
Target:  5'- cGCGCggugGCugGGCuGCGCGGCGGGgccgGCGACg -3'
miRNA:   3'- -CGCGa---UG--CCG-CGUGCCGUUCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 21768 0.78 0.426238
Target:  5'- uGCGCUACGGCGCugGgacuuuggcugcuGCGGGccGCGGCc -3'
miRNA:   3'- -CGCGAUGCCGCGugC-------------CGUUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 181744 0.77 0.444608
Target:  5'- cCGCUGCGuGCGCcgACGGCGuuucaagguGUGCGACg -3'
miRNA:   3'- cGCGAUGC-CGCG--UGCCGUu--------CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 13139 0.77 0.462509
Target:  5'- cCGCUACGGgccCGUGCGGCGuuacagcgucuGGUGCGGCa -3'
miRNA:   3'- cGCGAUGCC---GCGUGCCGU-----------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158351 0.76 0.518328
Target:  5'- cGCuCUGCGGCaGUcaGCGGguGGUGCGGCa -3'
miRNA:   3'- -CGcGAUGCCG-CG--UGCCguUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 37924 0.75 0.576629
Target:  5'- gGCGCccacagcGCGGCGCGCGgguGCAGGUGCaGCg -3'
miRNA:   3'- -CGCGa------UGCCGCGUGC---CGUUCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 102424 0.74 0.620304
Target:  5'- gGCGgUGCGGCGCGCcGCAuaccgcauuuuuaccGcGUACGACg -3'
miRNA:   3'- -CGCgAUGCCGCGUGcCGU---------------U-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 111996 0.73 0.646225
Target:  5'- -aGCUGCGGCGgcUugGGCAGcaGCGGCg -3'
miRNA:   3'- cgCGAUGCCGC--GugCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 101175 0.73 0.676036
Target:  5'- cCGCgGCGGCGCACGccauCAAGUuccACGACc -3'
miRNA:   3'- cGCGaUGCCGCGUGCc---GUUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 38173 0.73 0.685916
Target:  5'- -aGC-AUGGCGCGCGGCAcGGUcccCGACg -3'
miRNA:   3'- cgCGaUGCCGCGUGCCGU-UCAu--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 39945 0.73 0.695753
Target:  5'- gGUGCggaggACGGCG-ACGGCGAauaaaagcgacGUGCGGCg -3'
miRNA:   3'- -CGCGa----UGCCGCgUGCCGUU-----------CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 180841 0.73 0.695753
Target:  5'- uGCGCgacuaccaGCGGCcCAUGGUGcAGUACGACg -3'
miRNA:   3'- -CGCGa-------UGCCGcGUGCCGU-UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 2366 0.72 0.70554
Target:  5'- gGCGCgcUGGCGCugGgacGCGAGU-CGGCg -3'
miRNA:   3'- -CGCGauGCCGCGugC---CGUUCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 88358 0.72 0.715268
Target:  5'- cCGCUgGCGGCGCuGCcGCGAG-ACGACg -3'
miRNA:   3'- cGCGA-UGCCGCG-UGcCGUUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158726 0.72 0.724928
Target:  5'- uGUGCaGCaGGCGCGCGGC-GGUuuagcaGCGGCu -3'
miRNA:   3'- -CGCGaUG-CCGCGUGCCGuUCA------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 16826 0.72 0.734513
Target:  5'- -gGuCUACGGCGCGCGGCcAGgcUGGa -3'
miRNA:   3'- cgC-GAUGCCGCGUGCCGuUCauGCUg -5'
1559 5' -55.7 NC_001347.2 + 38369 0.72 0.734513
Target:  5'- cCGCUAUcGCGCACGGCGcGUccccgccgGCGGCc -3'
miRNA:   3'- cGCGAUGcCGCGUGCCGUuCA--------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.