Results 81 - 100 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1559 | 5' | -55.7 | NC_001347.2 | + | 84909 | 0.67 | 0.936526 |
Target: 5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3' miRNA: 3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 67024 | 0.67 | 0.941158 |
Target: 5'- -gGCUGCGGagacaGCuGCGGCG-GUccucGCGACg -3' miRNA: 3'- cgCGAUGCCg----CG-UGCCGUuCA----UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 229524 | 0.67 | 0.941158 |
Target: 5'- gGUGUguCGGgGCGCGGCGGGUGgGu- -3' miRNA: 3'- -CGCGauGCCgCGUGCCGUUCAUgCug -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 93437 | 0.67 | 0.945564 |
Target: 5'- cGCGC-ACGGCGCGaaucaGCAcGUAcuCGACg -3' miRNA: 3'- -CGCGaUGCCGCGUgc---CGUuCAU--GCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 138957 | 0.67 | 0.945564 |
Target: 5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3' miRNA: 3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 193983 | 0.67 | 0.945564 |
Target: 5'- cGUGUacGCGGCGCugGugggGCAggauaaguuGGUGCGGCu -3' miRNA: 3'- -CGCGa-UGCCGCGugC----CGU---------UCAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 86009 | 0.67 | 0.945564 |
Target: 5'- cCGCcGCGGCGCcCGGCAgacAGccGCuGACg -3' miRNA: 3'- cGCGaUGCCGCGuGCCGU---UCa-UG-CUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 100308 | 0.67 | 0.945564 |
Target: 5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3' miRNA: 3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 189420 | 0.67 | 0.945564 |
Target: 5'- -aGCcagaaacCGGUGCugGGCAAGcgagucGCGACg -3' miRNA: 3'- cgCGau-----GCCGCGugCCGUUCa-----UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 142566 | 0.67 | 0.945564 |
Target: 5'- -gGCUgGCGGCGU-CGGCGGGagcagcggggGCGGCg -3' miRNA: 3'- cgCGA-UGCCGCGuGCCGUUCa---------UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 107425 | 0.67 | 0.945564 |
Target: 5'- aCGCUcCGGCGCGgCGGaCGAGg--GACu -3' miRNA: 3'- cGCGAuGCCGCGU-GCC-GUUCaugCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 192966 | 0.66 | 0.949748 |
Target: 5'- -aGUaGCGGCGCGCcccGGCGuucAGUcGCGGCu -3' miRNA: 3'- cgCGaUGCCGCGUG---CCGU---UCA-UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 128464 | 0.66 | 0.949748 |
Target: 5'- gGCGCgACGGCGCGCGcacGCGGGa----- -3' miRNA: 3'- -CGCGaUGCCGCGUGC---CGUUCaugcug -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 140042 | 0.66 | 0.949748 |
Target: 5'- gGCGCgGCaucccaGCGC-CGGCG-GUACGGCc -3' miRNA: 3'- -CGCGaUGc-----CGCGuGCCGUuCAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 100113 | 0.66 | 0.949748 |
Target: 5'- cGCGUguaGCGuccaacGCGCACGGCGcuUGCgGACg -3' miRNA: 3'- -CGCGa--UGC------CGCGUGCCGUucAUG-CUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 99532 | 0.66 | 0.953713 |
Target: 5'- cGCGauCUGCGGCcgggucGCGCGGCAG---UGACa -3' miRNA: 3'- -CGC--GAUGCCG------CGUGCCGUUcauGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 40460 | 0.66 | 0.953713 |
Target: 5'- aCGCUGCcuGCGCACuGCcGGUGCGuguCg -3' miRNA: 3'- cGCGAUGc-CGCGUGcCGuUCAUGCu--G- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 763 | 0.66 | 0.957461 |
Target: 5'- -aGCUGCGuGuCGCccGCGGCAcacggGCGACg -3' miRNA: 3'- cgCGAUGC-C-GCG--UGCCGUuca--UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 88680 | 0.66 | 0.957461 |
Target: 5'- gGCGC--CGGCGCGCccuGCuGGgACGACg -3' miRNA: 3'- -CGCGauGCCGCGUGc--CGuUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 39678 | 0.66 | 0.957461 |
Target: 5'- -gGCaGCGacGUGCACGGCGcGUGCuGGCg -3' miRNA: 3'- cgCGaUGC--CGCGUGCCGUuCAUG-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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