miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 193983 0.67 0.945564
Target:  5'- cGUGUacGCGGCGCugGugggGCAggauaaguuGGUGCGGCu -3'
miRNA:   3'- -CGCGa-UGCCGCGugC----CGU---------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 138957 0.67 0.945564
Target:  5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3'
miRNA:   3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 229524 0.67 0.941158
Target:  5'- gGUGUguCGGgGCGCGGCGGGUGgGu- -3'
miRNA:   3'- -CGCGauGCCgCGUGCCGUUCAUgCug -5'
1559 5' -55.7 NC_001347.2 + 67024 0.67 0.941158
Target:  5'- -gGCUGCGGagacaGCuGCGGCG-GUccucGCGACg -3'
miRNA:   3'- cgCGAUGCCg----CG-UGCCGUuCA----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 84909 0.67 0.936526
Target:  5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3'
miRNA:   3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 65728 0.67 0.936526
Target:  5'- gGCGgUggAgGGCGCGCGGCAacucgagauGGUGuaccCGGCa -3'
miRNA:   3'- -CGCgA--UgCCGCGUGCCGU---------UCAU----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 76797 0.67 0.936526
Target:  5'- -gGCUAaCGGCGCugucagccaGCGGCAcGUGCuugcuGACg -3'
miRNA:   3'- cgCGAU-GCCGCG---------UGCCGUuCAUG-----CUG- -5'
1559 5' -55.7 NC_001347.2 + 190805 0.67 0.93364
Target:  5'- cGCGCUGC-GCGCucguCaGCAGGUagaaggaaaaagcgcGCGGCa -3'
miRNA:   3'- -CGCGAUGcCGCGu---GcCGUUCA---------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 31591 0.67 0.93167
Target:  5'- -aGCUGCGuCGUcaaggACGGCGuGUugGACg -3'
miRNA:   3'- cgCGAUGCcGCG-----UGCCGUuCAugCUG- -5'
1559 5' -55.7 NC_001347.2 + 38322 0.67 0.93167
Target:  5'- gGCGCcgUACGGCuGCGgaGGCAcaGGUACaGCg -3'
miRNA:   3'- -CGCG--AUGCCG-CGUg-CCGU--UCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 159285 0.67 0.93167
Target:  5'- gGUGCUgGCGGCGCcgggcgccACGGCcacAAGUucaucuCGGCa -3'
miRNA:   3'- -CGCGA-UGCCGCG--------UGCCG---UUCAu-----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 158097 0.67 0.93167
Target:  5'- cGCGCUgcGCGGCgGCcucauCGGCAGcGUcauCGACc -3'
miRNA:   3'- -CGCGA--UGCCG-CGu----GCCGUU-CAu--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 152465 0.67 0.93167
Target:  5'- cGUGCaACGGCGaCGCGGuUAAGggaGACc -3'
miRNA:   3'- -CGCGaUGCCGC-GUGCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 17340 0.67 0.93167
Target:  5'- cGCGCgUAUGGcCGC-CGGCcacGAGaGCGAUg -3'
miRNA:   3'- -CGCG-AUGCC-GCGuGCCG---UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 167695 0.67 0.931171
Target:  5'- cGCGUcGCGGCGUAUG-CAAGUggucuuccagcacGCGAUc -3'
miRNA:   3'- -CGCGaUGCCGCGUGCcGUUCA-------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 168530 0.67 0.926586
Target:  5'- cUGCUcgGCGGCGUACaGCGGGUcGCG-Cg -3'
miRNA:   3'- cGCGA--UGCCGCGUGcCGUUCA-UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 153235 0.67 0.926586
Target:  5'- gGCGCg--GGCGCGCgucGGCcGGcgACGGCg -3'
miRNA:   3'- -CGCGaugCCGCGUG---CCGuUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 140786 0.67 0.926586
Target:  5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3'
miRNA:   3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 87644 0.67 0.926586
Target:  5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3'
miRNA:   3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 54664 0.67 0.926586
Target:  5'- aGCGCUuauaucguuuACGGgGgAUGGCGAuagACGACu -3'
miRNA:   3'- -CGCGA----------UGCCgCgUGCCGUUca-UGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.