Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1559 | 5' | -55.7 | NC_001347.2 | + | 166762 | 0.68 | 0.923427 |
Target: 5'- uGCGCUACGGaGCGCGccaugagcucggccaGCAGGuccacaUugGGCg -3' miRNA: 3'- -CGCGAUGCCgCGUGC---------------CGUUC------AugCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 95473 | 0.68 | 0.921275 |
Target: 5'- cGCGCgucacGCGGCGC-CGGU--GU-CGGCg -3' miRNA: 3'- -CGCGa----UGCCGCGuGCCGuuCAuGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 40527 | 0.68 | 0.921275 |
Target: 5'- gGUGUUuCGGCGCGCuGCcGGUGCGu- -3' miRNA: 3'- -CGCGAuGCCGCGUGcCGuUCAUGCug -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 75030 | 0.68 | 0.91798 |
Target: 5'- aCGUUACGGCGauuguagguaacgaGCGGCAAcGUggcgaaGCGACc -3' miRNA: 3'- cGCGAUGCCGCg-------------UGCCGUU-CA------UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 152378 | 0.68 | 0.909975 |
Target: 5'- gGgGCUGCGuCGCcugcgACGGCGGGUggagaugagGCGGCg -3' miRNA: 3'- -CgCGAUGCcGCG-----UGCCGUUCA---------UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 101437 | 0.68 | 0.909975 |
Target: 5'- gGUGCUGCGcGCGCuuaaaaacACGGCcgacgccaugGAGcGCGGCu -3' miRNA: 3'- -CGCGAUGC-CGCG--------UGCCG----------UUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 173537 | 0.68 | 0.909975 |
Target: 5'- cGCGUgGCGGCG-GCGGUGGugGCGGCa -3' miRNA: 3'- -CGCGaUGCCGCgUGCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 158602 | 0.68 | 0.909975 |
Target: 5'- cUGCUGUGcGCGCGCugucagacgGGCGAGUaccGCGACa -3' miRNA: 3'- cGCGAUGC-CGCGUG---------CCGUUCA---UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 228360 | 0.68 | 0.909975 |
Target: 5'- uGCGaUGCGGUGgAugUGGCGGgGUGCGGCg -3' miRNA: 3'- -CGCgAUGCCGCgU--GCCGUU-CAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 36619 | 0.68 | 0.908202 |
Target: 5'- gGUGUUGCuguauggacuggaaGGCGCACGuuGAGUACGcGCa -3' miRNA: 3'- -CGCGAUG--------------CCGCGUGCcgUUCAUGC-UG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 191257 | 0.68 | 0.903988 |
Target: 5'- -gGC-ACGGCGUAaugcgGGCAGgcGUGCGGCa -3' miRNA: 3'- cgCGaUGCCGCGUg----CCGUU--CAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 140329 | 0.68 | 0.903988 |
Target: 5'- uGgGCUGCGcCGCGgGGCu-GUGCGAg -3' miRNA: 3'- -CgCGAUGCcGCGUgCCGuuCAUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 99303 | 0.68 | 0.903988 |
Target: 5'- gGCGCguaACGcUGCACGGCuAGauguuUACGACg -3' miRNA: 3'- -CGCGa--UGCcGCGUGCCGuUC-----AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 1797 | 0.68 | 0.903988 |
Target: 5'- cUGCUG-GGCGCGUGGCAggagcuggcgcAGUACGAg -3' miRNA: 3'- cGCGAUgCCGCGUGCCGU-----------UCAUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 79301 | 0.68 | 0.903377 |
Target: 5'- aGUGCUcgacuuuACGGUGCGCGGCGacaAGcUGUGGCu -3' miRNA: 3'- -CGCGA-------UGCCGCGUGCCGU---UC-AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 157988 | 0.68 | 0.898409 |
Target: 5'- cGCGCggaggaggcucgacgGCGGCaGCuGCGGCG-GUAgGACa -3' miRNA: 3'- -CGCGa--------------UGCCG-CG-UGCCGUuCAUgCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 225552 | 0.68 | 0.897779 |
Target: 5'- gGCGCU-CGGaCGgAUGGgGAGaACGGCg -3' miRNA: 3'- -CGCGAuGCC-GCgUGCCgUUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 1197 | 0.68 | 0.897779 |
Target: 5'- gGCGCcgUGUGGCGCGCGGCGuuuuUGGCc -3' miRNA: 3'- -CGCG--AUGCCGCGUGCCGUucauGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 176630 | 0.68 | 0.89135 |
Target: 5'- -gGCccagACGGUGCACGGC----GCGGCg -3' miRNA: 3'- cgCGa---UGCCGCGUGCCGuucaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 18351 | 0.68 | 0.89135 |
Target: 5'- aCGCUGCGGC-CGUGGCcAAG-ACGGCc -3' miRNA: 3'- cGCGAUGCCGcGUGCCG-UUCaUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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