miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 219 0.69 0.884705
Target:  5'- gGUGUgucgGCGGUguGCGCGGCcucgggguGUGCGGCu -3'
miRNA:   3'- -CGCGa---UGCCG--CGUGCCGuu------CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 763 0.66 0.957461
Target:  5'- -aGCUGCGuGuCGCccGCGGCAcacggGCGACg -3'
miRNA:   3'- cgCGAUGC-C-GCG--UGCCGUuca--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1197 0.68 0.897779
Target:  5'- gGCGCcgUGUGGCGCGCGGCGuuuuUGGCc -3'
miRNA:   3'- -CGCG--AUGCCGCGUGCCGUucauGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1499 0.66 0.960995
Target:  5'- gGCGCUG-GGCGC-CGGguuccgcguguuCGuGUACGACc -3'
miRNA:   3'- -CGCGAUgCCGCGuGCC------------GUuCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1588 0.71 0.753421
Target:  5'- -gGC-ACGGCGCG-GGCGagguGGUGCGGCu -3'
miRNA:   3'- cgCGaUGCCGCGUgCCGU----UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 1797 0.68 0.903988
Target:  5'- cUGCUG-GGCGCGUGGCAggagcuggcgcAGUACGAg -3'
miRNA:   3'- cGCGAUgCCGCGUGCCGU-----------UCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 1900 0.71 0.771922
Target:  5'- uGUGCUGCggcuggcuGGCGCugGGCGcGGUGCuGCc -3'
miRNA:   3'- -CGCGAUG--------CCGCGugCCGU-UCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 1937 0.78 0.410012
Target:  5'- cGCGCggugGCugGGCuGCGCGGCGGGgccgGCGACg -3'
miRNA:   3'- -CGCGa---UG--CCG-CGUGCCGUUCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 2091 0.7 0.848391
Target:  5'- cGCaGCcgUACGGCGCcgcCGGCGGGggcGCGAUu -3'
miRNA:   3'- -CG-CG--AUGCCGCGu--GCCGUUCa--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 2182 0.7 0.832522
Target:  5'- gGCGCcgACGGUG-AUGGUggGUuCGACa -3'
miRNA:   3'- -CGCGa-UGCCGCgUGCCGuuCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 2366 0.72 0.70554
Target:  5'- gGCGCgcUGGCGCugGgacGCGAGU-CGGCg -3'
miRNA:   3'- -CGCGauGCCGCGugC---CGUUCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 13139 0.77 0.462509
Target:  5'- cCGCUACGGgccCGUGCGGCGuuacagcgucuGGUGCGGCa -3'
miRNA:   3'- cGCGAUGCC---GCGUGCCGU-----------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 15386 0.7 0.824324
Target:  5'- aGCGCgaGCGGCGUauucuGCaGCAgcAGUAUGACu -3'
miRNA:   3'- -CGCGa-UGCCGCG-----UGcCGU--UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 16826 0.72 0.734513
Target:  5'- -gGuCUACGGCGCGCGGCcAGgcUGGa -3'
miRNA:   3'- cgC-GAUGCCGCGUGCCGuUCauGCUg -5'
1559 5' -55.7 NC_001347.2 + 17340 0.67 0.93167
Target:  5'- cGCGCgUAUGGcCGC-CGGCcacGAGaGCGAUg -3'
miRNA:   3'- -CGCG-AUGCC-GCGuGCCG---UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 18351 0.68 0.89135
Target:  5'- aCGCUGCGGC-CGUGGCcAAG-ACGGCc -3'
miRNA:   3'- cGCGAUGCCGcGUGCCG-UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 18736 0.7 0.848391
Target:  5'- cCGCUucgaccGCGGauuGCGCGGCGAGUGuCGGu -3'
miRNA:   3'- cGCGA------UGCCg--CGUGCCGUUCAU-GCUg -5'
1559 5' -55.7 NC_001347.2 + 19117 0.66 0.963998
Target:  5'- cGCGUuccguacaacgaaUGCGGCGUcgaauuaccggGCGGCGAuagcaGCGACg -3'
miRNA:   3'- -CGCG-------------AUGCCGCG-----------UGCCGUUca---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 21768 0.78 0.426238
Target:  5'- uGCGCUACGGCGCugGgacuuuggcugcuGCGGGccGCGGCc -3'
miRNA:   3'- -CGCGAUGCCGCGugC-------------CGUUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 26322 0.66 0.967141
Target:  5'- cGCGCUGguuUGGCuggguuaccccucGCugGGCuacAAGUgcaGCGACg -3'
miRNA:   3'- -CGCGAU---GCCG-------------CGugCCG---UUCA---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.