miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 75030 0.68 0.91798
Target:  5'- aCGUUACGGCGauuguagguaacgaGCGGCAAcGUggcgaaGCGACc -3'
miRNA:   3'- cGCGAUGCCGCg-------------UGCCGUU-CA------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 75969 0.66 0.967444
Target:  5'- cGgGCUGCGGCGaguCGcccaGCGGGU-CGGCc -3'
miRNA:   3'- -CgCGAUGCCGCgu-GC----CGUUCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 76624 0.71 0.762727
Target:  5'- gGCgGCUGCGGC-CGCGGCgGAGgccgaaGCGGCc -3'
miRNA:   3'- -CG-CGAUGCCGcGUGCCG-UUCa-----UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 76797 0.67 0.936526
Target:  5'- -gGCUAaCGGCGCugucagccaGCGGCAcGUGCuugcuGACg -3'
miRNA:   3'- cgCGAU-GCCGCG---------UGCCGUuCAUG-----CUG- -5'
1559 5' -55.7 NC_001347.2 + 77509 0.69 0.884705
Target:  5'- aCGgUGCGGCGCGUGGCcgagGAGUggaaguugcacGCGGCg -3'
miRNA:   3'- cGCgAUGCCGCGUGCCG----UUCA-----------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 77935 0.69 0.870066
Target:  5'- uGCGCUcggaGCGGCuggaggcgcagcuGCGCGGCAAGcACa-- -3'
miRNA:   3'- -CGCGA----UGCCG-------------CGUGCCGUUCaUGcug -5'
1559 5' -55.7 NC_001347.2 + 79301 0.68 0.903377
Target:  5'- aGUGCUcgacuuuACGGUGCGCGGCGacaAGcUGUGGCu -3'
miRNA:   3'- -CGCGA-------UGCCGCGUGCCGU---UC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 82317 0.71 0.781
Target:  5'- aGCGCUGCGGUuucCACGcccaguGCcGGUGCGGCc -3'
miRNA:   3'- -CGCGAUGCCGc--GUGC------CGuUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 84909 0.67 0.936526
Target:  5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3'
miRNA:   3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 86009 0.67 0.945564
Target:  5'- cCGCcGCGGCGCcCGGCAgacAGccGCuGACg -3'
miRNA:   3'- cGCGaUGCCGCGuGCCGU---UCa-UG-CUG- -5'
1559 5' -55.7 NC_001347.2 + 87644 0.67 0.926586
Target:  5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3'
miRNA:   3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 88358 0.72 0.715268
Target:  5'- cCGCUgGCGGCGCuGCcGCGAG-ACGACg -3'
miRNA:   3'- cGCGA-UGCCGCG-UGcCGUUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 88680 0.66 0.957461
Target:  5'- gGCGC--CGGCGCGCccuGCuGGgACGACg -3'
miRNA:   3'- -CGCGauGCCGCGUGc--CGuUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 93206 0.66 0.959607
Target:  5'- aGCGCUcgcGCuGGCGacgagcucgcugaGCGGCAGcgGCGGCa -3'
miRNA:   3'- -CGCGA---UG-CCGCg------------UGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 93437 0.67 0.945564
Target:  5'- cGCGC-ACGGCGCGaaucaGCAcGUAcuCGACg -3'
miRNA:   3'- -CGCGaUGCCGCGUgc---CGUuCAU--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 95473 0.68 0.921275
Target:  5'- cGCGCgucacGCGGCGC-CGGU--GU-CGGCg -3'
miRNA:   3'- -CGCGa----UGCCGCGuGCCGuuCAuGCUG- -5'
1559 5' -55.7 NC_001347.2 + 97909 0.69 0.863516
Target:  5'- gGCGUcggGCGGCGgcgguaacaCACGGCGaaucAGuUGCGACa -3'
miRNA:   3'- -CGCGa--UGCCGC---------GUGCCGU----UC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 99303 0.68 0.903988
Target:  5'- gGCGCguaACGcUGCACGGCuAGauguuUACGACg -3'
miRNA:   3'- -CGCGa--UGCcGCGUGCCGuUC-----AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 99532 0.66 0.953713
Target:  5'- cGCGauCUGCGGCcgggucGCGCGGCAG---UGACa -3'
miRNA:   3'- -CGC--GAUGCCG------CGUGCCGUUcauGCUG- -5'
1559 5' -55.7 NC_001347.2 + 100113 0.66 0.949748
Target:  5'- cGCGUguaGCGuccaacGCGCACGGCGcuUGCgGACg -3'
miRNA:   3'- -CGCGa--UGC------CGCGUGCCGUucAUG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.