miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 100308 0.67 0.945564
Target:  5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3'
miRNA:   3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 101175 0.73 0.676036
Target:  5'- cCGCgGCGGCGCACGccauCAAGUuccACGACc -3'
miRNA:   3'- cGCGaUGCCGCGUGCc---GUUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 101437 0.68 0.909975
Target:  5'- gGUGCUGCGcGCGCuuaaaaacACGGCcgacgccaugGAGcGCGGCu -3'
miRNA:   3'- -CGCGAUGC-CGCG--------UGCCG----------UUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 102424 0.74 0.620304
Target:  5'- gGCGgUGCGGCGCGCcGCAuaccgcauuuuuaccGcGUACGACg -3'
miRNA:   3'- -CGCgAUGCCGCGUGcCGU---------------U-CAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 104442 0.71 0.762727
Target:  5'- cCGCcACGGUGCACGGaCAAaaggccgcGUGCGAa -3'
miRNA:   3'- cGCGaUGCCGCGUGCC-GUU--------CAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 107351 0.66 0.960995
Target:  5'- cGC-CUGCGGCuGCGacGCGaaacGGUGCGACg -3'
miRNA:   3'- -CGcGAUGCCG-CGUgcCGU----UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 107425 0.67 0.945564
Target:  5'- aCGCUcCGGCGCGgCGGaCGAGg--GACu -3'
miRNA:   3'- cGCGAuGCCGCGU-GCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 111996 0.73 0.646225
Target:  5'- -aGCUGCGGCGgcUugGGCAGcaGCGGCg -3'
miRNA:   3'- cgCGAUGCCGC--GugCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 112849 0.71 0.798766
Target:  5'- cCGCUACGGCGC-CGGgAuacAUGACg -3'
miRNA:   3'- cGCGAUGCCGCGuGCCgUucaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 126646 0.71 0.789951
Target:  5'- gGCGCUGgcacGCGCGCGGUugcucGAGUAcCGGCg -3'
miRNA:   3'- -CGCGAUgc--CGCGUGCCG-----UUCAU-GCUG- -5'
1559 5' -55.7 NC_001347.2 + 127421 0.69 0.884705
Target:  5'- uGCGCgACGGCGUcucCGGUcuGGcGCGACa -3'
miRNA:   3'- -CGCGaUGCCGCGu--GCCGu-UCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 128464 0.66 0.949748
Target:  5'- gGCGCgACGGCGCGCGcacGCGGGa----- -3'
miRNA:   3'- -CGCGaUGCCGCGUGC---CGUUCaugcug -5'
1559 5' -55.7 NC_001347.2 + 129214 0.66 0.9589
Target:  5'- cGCGUccgccuCGGUGCcccuuaacccccacuACGGUAAGUcuuACGACa -3'
miRNA:   3'- -CGCGau----GCCGCG---------------UGCCGUUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 136285 0.66 0.960652
Target:  5'- cCGCcGCGGCccaugcccgGCACGGggcucgcgcucccUAGGUGCGGCc -3'
miRNA:   3'- cGCGaUGCCG---------CGUGCC-------------GUUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 138957 0.67 0.945564
Target:  5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3'
miRNA:   3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 139668 0.69 0.877151
Target:  5'- uGUGCUgaucgagGCGGCGuUGCGGCAGuuuGUgcACGACa -3'
miRNA:   3'- -CGCGA-------UGCCGC-GUGCCGUU---CA--UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 140042 0.66 0.949748
Target:  5'- gGCGCgGCaucccaGCGC-CGGCG-GUACGGCc -3'
miRNA:   3'- -CGCGaUGc-----CGCGuGCCGUuCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 140329 0.68 0.903988
Target:  5'- uGgGCUGCGcCGCGgGGCu-GUGCGAg -3'
miRNA:   3'- -CgCGAUGCcGCGUgCCGuuCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 140786 0.67 0.926586
Target:  5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3'
miRNA:   3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 142503 0.66 0.957461
Target:  5'- uUGCUuCGGCGUgccCGGCGAG-ACGGg -3'
miRNA:   3'- cGCGAuGCCGCGu--GCCGUUCaUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.