miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 142566 0.67 0.945564
Target:  5'- -gGCUgGCGGCGU-CGGCGGGagcagcggggGCGGCg -3'
miRNA:   3'- cgCGA-UGCCGCGuGCCGUUCa---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 144636 0.66 0.964322
Target:  5'- uGgGCaggACGGCG-ACGGCAgcgAGaACGGCu -3'
miRNA:   3'- -CgCGa--UGCCGCgUGCCGU---UCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 148599 0.66 0.964322
Target:  5'- -aGCgGCGGCGUgacCGGCG-GUGCGGu -3'
miRNA:   3'- cgCGaUGCCGCGu--GCCGUuCAUGCUg -5'
1559 5' -55.7 NC_001347.2 + 150613 0.7 0.83171
Target:  5'- gGCGUUuccaacgacaaucACGGCGC-CGGCGGuacUGCGGCg -3'
miRNA:   3'- -CGCGA-------------UGCCGCGuGCCGUUc--AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 152378 0.68 0.909975
Target:  5'- gGgGCUGCGuCGCcugcgACGGCGGGUggagaugagGCGGCg -3'
miRNA:   3'- -CgCGAUGCcGCG-----UGCCGUUCA---------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 152465 0.67 0.93167
Target:  5'- cGUGCaACGGCGaCGCGGuUAAGggaGACc -3'
miRNA:   3'- -CGCGaUGCCGC-GUGCC-GUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 153235 0.67 0.926586
Target:  5'- gGCGCg--GGCGCGCgucGGCcGGcgACGGCg -3'
miRNA:   3'- -CGCGaugCCGCGUG---CCGuUCa-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 157988 0.68 0.898409
Target:  5'- cGCGCggaggaggcucgacgGCGGCaGCuGCGGCG-GUAgGACa -3'
miRNA:   3'- -CGCGa--------------UGCCG-CG-UGCCGUuCAUgCUG- -5'
1559 5' -55.7 NC_001347.2 + 158097 0.67 0.93167
Target:  5'- cGCGCUgcGCGGCgGCcucauCGGCAGcGUcauCGACc -3'
miRNA:   3'- -CGCGA--UGCCG-CGu----GCCGUU-CAu--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 158351 0.76 0.518328
Target:  5'- cGCuCUGCGGCaGUcaGCGGguGGUGCGGCa -3'
miRNA:   3'- -CGcGAUGCCG-CG--UGCCguUCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158602 0.68 0.909975
Target:  5'- cUGCUGUGcGCGCGCugucagacgGGCGAGUaccGCGACa -3'
miRNA:   3'- cGCGAUGC-CGCGUG---------CCGUUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 158726 0.72 0.724928
Target:  5'- uGUGCaGCaGGCGCGCGGC-GGUuuagcaGCGGCu -3'
miRNA:   3'- -CGCGaUG-CCGCGUGCCGuUCA------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 159285 0.67 0.93167
Target:  5'- gGUGCUgGCGGCGCcgggcgccACGGCcacAAGUucaucuCGGCa -3'
miRNA:   3'- -CGCGA-UGCCGCG--------UGCCG---UUCAu-----GCUG- -5'
1559 5' -55.7 NC_001347.2 + 166762 0.68 0.923427
Target:  5'- uGCGCUACGGaGCGCGccaugagcucggccaGCAGGuccacaUugGGCg -3'
miRNA:   3'- -CGCGAUGCCgCGUGC---------------CGUUC------AugCUG- -5'
1559 5' -55.7 NC_001347.2 + 167695 0.67 0.931171
Target:  5'- cGCGUcGCGGCGUAUG-CAAGUggucuuccagcacGCGAUc -3'
miRNA:   3'- -CGCGaUGCCGCGUGCcGUUCA-------------UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 168530 0.67 0.926586
Target:  5'- cUGCUcgGCGGCGUACaGCGGGUcGCG-Cg -3'
miRNA:   3'- cGCGA--UGCCGCGUGcCGUUCA-UGCuG- -5'
1559 5' -55.7 NC_001347.2 + 168991 0.66 0.964322
Target:  5'- cGCGCUGCucaucCGCAUGGagaCGGGuUGCGACu -3'
miRNA:   3'- -CGCGAUGcc---GCGUGCC---GUUC-AUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 170401 0.66 0.957461
Target:  5'- cGCGCUGUGGCGCgagAUGGaCAccguGUcGCGGCa -3'
miRNA:   3'- -CGCGAUGCCGCG---UGCC-GUu---CA-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 172710 0.66 0.964322
Target:  5'- gGCGCUGCGGCugaaGC-CGuaCAAG-ACGGCu -3'
miRNA:   3'- -CGCGAUGCCG----CGuGCc-GUUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 173537 0.68 0.909975
Target:  5'- cGCGUgGCGGCG-GCGGUGGugGCGGCa -3'
miRNA:   3'- -CGCGaUGCCGCgUGCCGUUcaUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.