Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1559 | 5' | -55.7 | NC_001347.2 | + | 152378 | 0.68 | 0.909975 |
Target: 5'- gGgGCUGCGuCGCcugcgACGGCGGGUggagaugagGCGGCg -3' miRNA: 3'- -CgCGAUGCcGCG-----UGCCGUUCA---------UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 150613 | 0.7 | 0.83171 |
Target: 5'- gGCGUUuccaacgacaaucACGGCGC-CGGCGGuacUGCGGCg -3' miRNA: 3'- -CGCGA-------------UGCCGCGuGCCGUUc--AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 148599 | 0.66 | 0.964322 |
Target: 5'- -aGCgGCGGCGUgacCGGCG-GUGCGGu -3' miRNA: 3'- cgCGaUGCCGCGu--GCCGUuCAUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 144636 | 0.66 | 0.964322 |
Target: 5'- uGgGCaggACGGCG-ACGGCAgcgAGaACGGCu -3' miRNA: 3'- -CgCGa--UGCCGCgUGCCGU---UCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 142566 | 0.67 | 0.945564 |
Target: 5'- -gGCUgGCGGCGU-CGGCGGGagcagcggggGCGGCg -3' miRNA: 3'- cgCGA-UGCCGCGuGCCGUUCa---------UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 142503 | 0.66 | 0.957461 |
Target: 5'- uUGCUuCGGCGUgccCGGCGAG-ACGGg -3' miRNA: 3'- cGCGAuGCCGCGu--GCCGUUCaUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 140786 | 0.67 | 0.926586 |
Target: 5'- gGCGaggaUACcuuuagcGCGCACGGCAAaaGCGACu -3' miRNA: 3'- -CGCg---AUGc------CGCGUGCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 140329 | 0.68 | 0.903988 |
Target: 5'- uGgGCUGCGcCGCGgGGCu-GUGCGAg -3' miRNA: 3'- -CgCGAUGCcGCGUgCCGuuCAUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 140042 | 0.66 | 0.949748 |
Target: 5'- gGCGCgGCaucccaGCGC-CGGCG-GUACGGCc -3' miRNA: 3'- -CGCGaUGc-----CGCGuGCCGUuCAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 139668 | 0.69 | 0.877151 |
Target: 5'- uGUGCUgaucgagGCGGCGuUGCGGCAGuuuGUgcACGACa -3' miRNA: 3'- -CGCGA-------UGCCGC-GUGCCGUU---CA--UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 138957 | 0.67 | 0.945564 |
Target: 5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3' miRNA: 3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 136285 | 0.66 | 0.960652 |
Target: 5'- cCGCcGCGGCccaugcccgGCACGGggcucgcgcucccUAGGUGCGGCc -3' miRNA: 3'- cGCGaUGCCG---------CGUGCC-------------GUUCAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 129214 | 0.66 | 0.9589 |
Target: 5'- cGCGUccgccuCGGUGCcccuuaacccccacuACGGUAAGUcuuACGACa -3' miRNA: 3'- -CGCGau----GCCGCG---------------UGCCGUUCA---UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 128464 | 0.66 | 0.949748 |
Target: 5'- gGCGCgACGGCGCGCGcacGCGGGa----- -3' miRNA: 3'- -CGCGaUGCCGCGUGC---CGUUCaugcug -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 127421 | 0.69 | 0.884705 |
Target: 5'- uGCGCgACGGCGUcucCGGUcuGGcGCGACa -3' miRNA: 3'- -CGCGaUGCCGCGu--GCCGu-UCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 126646 | 0.71 | 0.789951 |
Target: 5'- gGCGCUGgcacGCGCGCGGUugcucGAGUAcCGGCg -3' miRNA: 3'- -CGCGAUgc--CGCGUGCCG-----UUCAU-GCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 112849 | 0.71 | 0.798766 |
Target: 5'- cCGCUACGGCGC-CGGgAuacAUGACg -3' miRNA: 3'- cGCGAUGCCGCGuGCCgUucaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 111996 | 0.73 | 0.646225 |
Target: 5'- -aGCUGCGGCGgcUugGGCAGcaGCGGCg -3' miRNA: 3'- cgCGAUGCCGC--GugCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 107425 | 0.67 | 0.945564 |
Target: 5'- aCGCUcCGGCGCGgCGGaCGAGg--GACu -3' miRNA: 3'- cGCGAuGCCGCGU-GCC-GUUCaugCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 107351 | 0.66 | 0.960995 |
Target: 5'- cGC-CUGCGGCuGCGacGCGaaacGGUGCGACg -3' miRNA: 3'- -CGcGAUGCCG-CGUgcCGU----UCAUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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