Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1559 | 5' | -55.7 | NC_001347.2 | + | 104442 | 0.71 | 0.762727 |
Target: 5'- cCGCcACGGUGCACGGaCAAaaggccgcGUGCGAa -3' miRNA: 3'- cGCGaUGCCGCGUGCC-GUU--------CAUGCUg -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 102424 | 0.74 | 0.620304 |
Target: 5'- gGCGgUGCGGCGCGCcGCAuaccgcauuuuuaccGcGUACGACg -3' miRNA: 3'- -CGCgAUGCCGCGUGcCGU---------------U-CAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 101437 | 0.68 | 0.909975 |
Target: 5'- gGUGCUGCGcGCGCuuaaaaacACGGCcgacgccaugGAGcGCGGCu -3' miRNA: 3'- -CGCGAUGC-CGCG--------UGCCG----------UUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 101175 | 0.73 | 0.676036 |
Target: 5'- cCGCgGCGGCGCACGccauCAAGUuccACGACc -3' miRNA: 3'- cGCGaUGCCGCGUGCc---GUUCA---UGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 100308 | 0.67 | 0.945564 |
Target: 5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3' miRNA: 3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 100113 | 0.66 | 0.949748 |
Target: 5'- cGCGUguaGCGuccaacGCGCACGGCGcuUGCgGACg -3' miRNA: 3'- -CGCGa--UGC------CGCGUGCCGUucAUG-CUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 99532 | 0.66 | 0.953713 |
Target: 5'- cGCGauCUGCGGCcgggucGCGCGGCAG---UGACa -3' miRNA: 3'- -CGC--GAUGCCG------CGUGCCGUUcauGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 99303 | 0.68 | 0.903988 |
Target: 5'- gGCGCguaACGcUGCACGGCuAGauguuUACGACg -3' miRNA: 3'- -CGCGa--UGCcGCGUGCCGuUC-----AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 97909 | 0.69 | 0.863516 |
Target: 5'- gGCGUcggGCGGCGgcgguaacaCACGGCGaaucAGuUGCGACa -3' miRNA: 3'- -CGCGa--UGCCGC---------GUGCCGU----UC-AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 95473 | 0.68 | 0.921275 |
Target: 5'- cGCGCgucacGCGGCGC-CGGU--GU-CGGCg -3' miRNA: 3'- -CGCGa----UGCCGCGuGCCGuuCAuGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 93437 | 0.67 | 0.945564 |
Target: 5'- cGCGC-ACGGCGCGaaucaGCAcGUAcuCGACg -3' miRNA: 3'- -CGCGaUGCCGCGUgc---CGUuCAU--GCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 93206 | 0.66 | 0.959607 |
Target: 5'- aGCGCUcgcGCuGGCGacgagcucgcugaGCGGCAGcgGCGGCa -3' miRNA: 3'- -CGCGA---UG-CCGCg------------UGCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 88680 | 0.66 | 0.957461 |
Target: 5'- gGCGC--CGGCGCGCccuGCuGGgACGACg -3' miRNA: 3'- -CGCGauGCCGCGUGc--CGuUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 88358 | 0.72 | 0.715268 |
Target: 5'- cCGCUgGCGGCGCuGCcGCGAG-ACGACg -3' miRNA: 3'- cGCGA-UGCCGCG-UGcCGUUCaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 87644 | 0.67 | 0.926586 |
Target: 5'- uUGCUcgccaGCGGCGCGCGuGCGgaucAGgccCGACa -3' miRNA: 3'- cGCGA-----UGCCGCGUGC-CGU----UCau-GCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 86009 | 0.67 | 0.945564 |
Target: 5'- cCGCcGCGGCGCcCGGCAgacAGccGCuGACg -3' miRNA: 3'- cGCGaUGCCGCGuGCCGU---UCa-UG-CUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 84909 | 0.67 | 0.936526 |
Target: 5'- cGCGaCUccaACGGUcuaGCACGGUAGagACGGCa -3' miRNA: 3'- -CGC-GA---UGCCG---CGUGCCGUUcaUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 82317 | 0.71 | 0.781 |
Target: 5'- aGCGCUGCGGUuucCACGcccaguGCcGGUGCGGCc -3' miRNA: 3'- -CGCGAUGCCGc--GUGC------CGuUCAUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 79301 | 0.68 | 0.903377 |
Target: 5'- aGUGCUcgacuuuACGGUGCGCGGCGacaAGcUGUGGCu -3' miRNA: 3'- -CGCGA-------UGCCGCGUGCCGU---UC-AUGCUG- -5' |
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1559 | 5' | -55.7 | NC_001347.2 | + | 77935 | 0.69 | 0.870066 |
Target: 5'- uGCGCUcggaGCGGCuggaggcgcagcuGCGCGGCAAGcACa-- -3' miRNA: 3'- -CGCGA----UGCCG-------------CGUGCCGUUCaUGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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