miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1559 5' -55.7 NC_001347.2 + 93206 0.66 0.959607
Target:  5'- aGCGCUcgcGCuGGCGacgagcucgcugaGCGGCAGcgGCGGCa -3'
miRNA:   3'- -CGCGA---UG-CCGCg------------UGCCGUUcaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 129214 0.66 0.9589
Target:  5'- cGCGUccgccuCGGUGCcccuuaacccccacuACGGUAAGUcuuACGACa -3'
miRNA:   3'- -CGCGau----GCCGCG---------------UGCCGUUCA---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 128464 0.66 0.949748
Target:  5'- gGCGCgACGGCGCGCGcacGCGGGa----- -3'
miRNA:   3'- -CGCGaUGCCGCGUGC---CGUUCaugcug -5'
1559 5' -55.7 NC_001347.2 + 100113 0.66 0.949748
Target:  5'- cGCGUguaGCGuccaacGCGCACGGCGcuUGCgGACg -3'
miRNA:   3'- -CGCGa--UGC------CGCGUGCCGUucAUG-CUG- -5'
1559 5' -55.7 NC_001347.2 + 138957 0.67 0.945564
Target:  5'- cGCGCUA--GCGC-CGGUggGgcccGCGGCu -3'
miRNA:   3'- -CGCGAUgcCGCGuGCCGuuCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 193983 0.67 0.945564
Target:  5'- cGUGUacGCGGCGCugGugggGCAggauaaguuGGUGCGGCu -3'
miRNA:   3'- -CGCGa-UGCCGCGugC----CGU---------UCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 192966 0.66 0.949748
Target:  5'- -aGUaGCGGCGCGCcccGGCGuucAGUcGCGGCu -3'
miRNA:   3'- cgCGaUGCCGCGUG---CCGU---UCA-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 100308 0.67 0.945564
Target:  5'- -gGCUGaGGuCGCGCGGCAGGca-GGCc -3'
miRNA:   3'- cgCGAUgCC-GCGUGCCGUUCaugCUG- -5'
1559 5' -55.7 NC_001347.2 + 86009 0.67 0.945564
Target:  5'- cCGCcGCGGCGCcCGGCAgacAGccGCuGACg -3'
miRNA:   3'- cGCGaUGCCGCGuGCCGU---UCa-UG-CUG- -5'
1559 5' -55.7 NC_001347.2 + 93437 0.67 0.945564
Target:  5'- cGCGC-ACGGCGCGaaucaGCAcGUAcuCGACg -3'
miRNA:   3'- -CGCGaUGCCGCGUgc---CGUuCAU--GCUG- -5'
1559 5' -55.7 NC_001347.2 + 140042 0.66 0.949748
Target:  5'- gGCGCgGCaucccaGCGC-CGGCG-GUACGGCc -3'
miRNA:   3'- -CGCGaUGc-----CGCGuGCCGUuCAUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 142503 0.66 0.957461
Target:  5'- uUGCUuCGGCGUgccCGGCGAG-ACGGg -3'
miRNA:   3'- cGCGAuGCCGCGu--GCCGUUCaUGCUg -5'
1559 5' -55.7 NC_001347.2 + 173667 0.66 0.957461
Target:  5'- -gGCgGCGGUG-GCGGCAAGaagcACGACc -3'
miRNA:   3'- cgCGaUGCCGCgUGCCGUUCa---UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 170401 0.66 0.957461
Target:  5'- cGCGCUGUGGCGCgagAUGGaCAccguGUcGCGGCa -3'
miRNA:   3'- -CGCGAUGCCGCG---UGCC-GUu---CA-UGCUG- -5'
1559 5' -55.7 NC_001347.2 + 38573 0.66 0.957461
Target:  5'- cGgGgUGCGGCGCcgacgcgaACGGCucGUACuGCg -3'
miRNA:   3'- -CgCgAUGCCGCG--------UGCCGuuCAUGcUG- -5'
1559 5' -55.7 NC_001347.2 + 39678 0.66 0.957461
Target:  5'- -gGCaGCGacGUGCACGGCGcGUGCuGGCg -3'
miRNA:   3'- cgCGaUGC--CGCGUGCCGUuCAUG-CUG- -5'
1559 5' -55.7 NC_001347.2 + 88680 0.66 0.957461
Target:  5'- gGCGC--CGGCGCGCccuGCuGGgACGACg -3'
miRNA:   3'- -CGCGauGCCGCGUGc--CGuUCaUGCUG- -5'
1559 5' -55.7 NC_001347.2 + 40460 0.66 0.953713
Target:  5'- aCGCUGCcuGCGCACuGCcGGUGCGuguCg -3'
miRNA:   3'- cGCGAUGc-CGCGUGcCGuUCAUGCu--G- -5'
1559 5' -55.7 NC_001347.2 + 99532 0.66 0.953713
Target:  5'- cGCGauCUGCGGCcgggucGCGCGGCAG---UGACa -3'
miRNA:   3'- -CGC--GAUGCCG------CGUGCCGUUcauGCUG- -5'
1559 5' -55.7 NC_001347.2 + 763 0.66 0.957461
Target:  5'- -aGCUGCGuGuCGCccGCGGCAcacggGCGACg -3'
miRNA:   3'- cgCGAUGC-C-GCG--UGCCGUuca--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.