miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1560 3' -60.7 NC_001347.2 + 199096 0.66 0.82172
Target:  5'- gCGGCCGCaCGCC-CCGaacggcucuggUUGUUGACCUg -3'
miRNA:   3'- aGUCGGCG-GCGGaGGU-----------GACGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 195638 0.66 0.82172
Target:  5'- cUguGCgCGCCgGCCUgUugUGUCGcacGCCCg -3'
miRNA:   3'- -AguCG-GCGG-CGGAgGugACGGU---UGGG- -5'
1560 3' -60.7 NC_001347.2 + 126061 0.66 0.82172
Target:  5'- gCAGCucucgCGCUaCCUggCCGCgcGCCAGCCCa -3'
miRNA:   3'- aGUCG-----GCGGcGGA--GGUGa-CGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 76185 0.66 0.82172
Target:  5'- gCGGCCGCacgaaGCgaUCCACguagGCCAcguGCUCc -3'
miRNA:   3'- aGUCGGCGg----CGg-AGGUGa---CGGU---UGGG- -5'
1560 3' -60.7 NC_001347.2 + 157697 0.66 0.813558
Target:  5'- uUCGGCUGCCcguGCUUCaccccaccaGCUcGCCGugCCu -3'
miRNA:   3'- -AGUCGGCGG---CGGAGg--------UGA-CGGUugGG- -5'
1560 3' -60.7 NC_001347.2 + 90336 0.66 0.813558
Target:  5'- cCGGcCCGCuauCGCCaCCGCUGCUAcugcuAUCCa -3'
miRNA:   3'- aGUC-GGCG---GCGGaGGUGACGGU-----UGGG- -5'
1560 3' -60.7 NC_001347.2 + 127779 0.66 0.813558
Target:  5'- aUCAcGCCGuuccCCGCCUgCACcgucGCCGuacACCCc -3'
miRNA:   3'- -AGU-CGGC----GGCGGAgGUGa---CGGU---UGGG- -5'
1560 3' -60.7 NC_001347.2 + 129210 0.66 0.813558
Target:  5'- -uGGCCGCgucCGCCUCgG-UGCCccuuAACCCc -3'
miRNA:   3'- agUCGGCG---GCGGAGgUgACGG----UUGGG- -5'
1560 3' -60.7 NC_001347.2 + 134897 0.66 0.805248
Target:  5'- aCGGUCGUgGUCUCCucgGCccgUGCCGggACCCu -3'
miRNA:   3'- aGUCGGCGgCGGAGG---UG---ACGGU--UGGG- -5'
1560 3' -60.7 NC_001347.2 + 113041 0.66 0.805248
Target:  5'- -uGGaCGCCGCCUC---UGCCGGCuCCg -3'
miRNA:   3'- agUCgGCGGCGGAGgugACGGUUG-GG- -5'
1560 3' -60.7 NC_001347.2 + 156169 0.66 0.805248
Target:  5'- -uGGCugCGCCGUCUCCcuCUGCUGuuuuguacgagcGCCCg -3'
miRNA:   3'- agUCG--GCGGCGGAGGu-GACGGU------------UGGG- -5'
1560 3' -60.7 NC_001347.2 + 114922 0.66 0.796799
Target:  5'- -uGGCCGCCcgcgcCCUUCAUaUGCCGACgCu -3'
miRNA:   3'- agUCGGCGGc----GGAGGUG-ACGGUUGgG- -5'
1560 3' -60.7 NC_001347.2 + 178889 0.66 0.796799
Target:  5'- ---cUCGUCGCCgCCGCUGCC-GCCg -3'
miRNA:   3'- agucGGCGGCGGaGGUGACGGuUGGg -5'
1560 3' -60.7 NC_001347.2 + 82598 0.66 0.796799
Target:  5'- -aAGCCGCgGCuCggCACgGCCGccACCCa -3'
miRNA:   3'- agUCGGCGgCG-GagGUGaCGGU--UGGG- -5'
1560 3' -60.7 NC_001347.2 + 118192 0.66 0.796799
Target:  5'- cCAGCCcCCGCCgCgCAUUGUCAccGCCg -3'
miRNA:   3'- aGUCGGcGGCGGaG-GUGACGGU--UGGg -5'
1560 3' -60.7 NC_001347.2 + 197109 0.66 0.788216
Target:  5'- --cGCUGCCGCCgcaaggccCCGCUGgaacuCgGGCCCg -3'
miRNA:   3'- aguCGGCGGCGGa-------GGUGAC-----GgUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 107154 0.66 0.788216
Target:  5'- cCAGCCGUaucucggcgCGCCUcucggaaaCCACgGCCAagacauugggACCCu -3'
miRNA:   3'- aGUCGGCG---------GCGGA--------GGUGaCGGU----------UGGG- -5'
1560 3' -60.7 NC_001347.2 + 208431 0.66 0.779507
Target:  5'- aUAG-CGCCGCCUagCGCcGUCAACUCg -3'
miRNA:   3'- aGUCgGCGGCGGAg-GUGaCGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 43128 0.66 0.779507
Target:  5'- aUCAGCgGCaUGCCg--AC-GCCGACCCg -3'
miRNA:   3'- -AGUCGgCG-GCGGaggUGaCGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 110664 0.66 0.779507
Target:  5'- gUCAGCCaGuUCGCCuUUCGC-GCCGGCgCCa -3'
miRNA:   3'- -AGUCGG-C-GGCGG-AGGUGaCGGUUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.