miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1560 3' -60.7 NC_001347.2 + 195447 1.12 0.001035
Target:  5'- aUCAGCCGCCGCCUCCACUGCCAACCCa -3'
miRNA:   3'- -AGUCGGCGGCGGAGGUGACGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 174258 0.83 0.103209
Target:  5'- gUCGGUCGCCGCCUCCGCgGCCcguuucgacgaAAUCCg -3'
miRNA:   3'- -AGUCGGCGGCGGAGGUGaCGG-----------UUGGG- -5'
1560 3' -60.7 NC_001347.2 + 196138 0.81 0.132125
Target:  5'- aUCGGCCGCUGCCUgccggcggcCCugUGCCGcggguuGCCCg -3'
miRNA:   3'- -AGUCGGCGGCGGA---------GGugACGGU------UGGG- -5'
1560 3' -60.7 NC_001347.2 + 67355 0.79 0.185187
Target:  5'- gCAGCCGCCGCCgucgCCGCcGCCucgGACUCc -3'
miRNA:   3'- aGUCGGCGGCGGa---GGUGaCGG---UUGGG- -5'
1560 3' -60.7 NC_001347.2 + 85984 0.78 0.203493
Target:  5'- -gAGCCGCCGCCacccgaaccgUCCGCcGCCGcggcGCCCg -3'
miRNA:   3'- agUCGGCGGCGG----------AGGUGaCGGU----UGGG- -5'
1560 3' -60.7 NC_001347.2 + 67660 0.78 0.218234
Target:  5'- gCuGCCGCCGCCaccaCCACcGCCAGCaCCa -3'
miRNA:   3'- aGuCGGCGGCGGa---GGUGaCGGUUG-GG- -5'
1560 3' -60.7 NC_001347.2 + 81771 0.78 0.223348
Target:  5'- cUCAGCCGCCGCgUCCAacGCCGuCUCg -3'
miRNA:   3'- -AGUCGGCGGCGgAGGUgaCGGUuGGG- -5'
1560 3' -60.7 NC_001347.2 + 28005 0.77 0.233879
Target:  5'- --cGCCGCCGUCaCCACcGCCGAUCCg -3'
miRNA:   3'- aguCGGCGGCGGaGGUGaCGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 156627 0.77 0.250456
Target:  5'- -uGGUCGCCGCUggcggcgCCGCUGCCGGgCCu -3'
miRNA:   3'- agUCGGCGGCGGa------GGUGACGGUUgGG- -5'
1560 3' -60.7 NC_001347.2 + 166135 0.76 0.274052
Target:  5'- uUCGGCCGCCGCCgcaAC-GCCcguGCCCg -3'
miRNA:   3'- -AGUCGGCGGCGGaggUGaCGGu--UGGG- -5'
1560 3' -60.7 NC_001347.2 + 208234 0.76 0.280222
Target:  5'- aCGGCCGCCGCCgcuaCCGCagagGCUucuCCCg -3'
miRNA:   3'- aGUCGGCGGCGGa---GGUGa---CGGuu-GGG- -5'
1560 3' -60.7 NC_001347.2 + 178806 0.76 0.286503
Target:  5'- gCuGCCGCCGCCaccccuucguccUCCGCcGCCAccACCCc -3'
miRNA:   3'- aGuCGGCGGCGG------------AGGUGaCGGU--UGGG- -5'
1560 3' -60.7 NC_001347.2 + 140959 0.75 0.306008
Target:  5'- --cGCCGUgGCCUuccagCCGCUGCUAGCCUa -3'
miRNA:   3'- aguCGGCGgCGGA-----GGUGACGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 38006 0.75 0.312732
Target:  5'- gCAGCCGCCgcgcgGCCUCgGCggcgggcGCCGACUCg -3'
miRNA:   3'- aGUCGGCGG-----CGGAGgUGa------CGGUUGGG- -5'
1560 3' -60.7 NC_001347.2 + 67965 0.75 0.319567
Target:  5'- gCGGCCGCCG-CUCCuuCUGCCggUUCa -3'
miRNA:   3'- aGUCGGCGGCgGAGGu-GACGGuuGGG- -5'
1560 3' -60.7 NC_001347.2 + 68174 0.75 0.319567
Target:  5'- -gGGCCGUCGCgagucccgCCGCUGCC-ACCCa -3'
miRNA:   3'- agUCGGCGGCGga------GGUGACGGuUGGG- -5'
1560 3' -60.7 NC_001347.2 + 63220 0.74 0.350966
Target:  5'- cCGGCCgcugacgcuguuuacGCCgGCCUCCGCgGCCGcugcGCCCg -3'
miRNA:   3'- aGUCGG---------------CGG-CGGAGGUGaCGGU----UGGG- -5'
1560 3' -60.7 NC_001347.2 + 222751 0.74 0.355413
Target:  5'- --cGCUGCCGCggCCAUUGCCGccgccGCCCa -3'
miRNA:   3'- aguCGGCGGCGgaGGUGACGGU-----UGGG- -5'
1560 3' -60.7 NC_001347.2 + 130907 0.74 0.355413
Target:  5'- gCAGCCGCCGCCgCCACcaCCAccACCa -3'
miRNA:   3'- aGUCGGCGGCGGaGGUGacGGU--UGGg -5'
1560 3' -60.7 NC_001347.2 + 161610 0.74 0.362914
Target:  5'- cCAGUCGCUGCCagaccgcuUCCACcgccuggaccaUGUCGACCCg -3'
miRNA:   3'- aGUCGGCGGCGG--------AGGUG-----------ACGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.