miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1560 5' -50.8 NC_001347.2 + 198248 0.66 0.997496
Target:  5'- gGGGGGacuuGGCUAAAGAuuuuGAgCAgggUGACg -3'
miRNA:   3'- -UCCUCgu--CCGAUUUCUu---CUgGU---ACUG- -5'
1560 5' -50.8 NC_001347.2 + 71240 0.66 0.997036
Target:  5'- ---cGCAGGUUucgucaucggaGAAGAAGACCGcGACc -3'
miRNA:   3'- uccuCGUCCGA-----------UUUCUUCUGGUaCUG- -5'
1560 5' -50.8 NC_001347.2 + 90660 0.66 0.996509
Target:  5'- gAGGAG-AGGCgGAGGAAGAuucguCCGagccUGACg -3'
miRNA:   3'- -UCCUCgUCCGaUUUCUUCU-----GGU----ACUG- -5'
1560 5' -50.8 NC_001347.2 + 47177 0.66 0.996509
Target:  5'- gAGGAGCgGGGCguccGAAGGCgAggaUGGCa -3'
miRNA:   3'- -UCCUCG-UCCGauuuCUUCUGgU---ACUG- -5'
1560 5' -50.8 NC_001347.2 + 155314 0.66 0.996157
Target:  5'- cGGGGcCGGGCUGgucggGGGAAGAaacgugguguggggcCCGUGAg -3'
miRNA:   3'- uCCUC-GUCCGAU-----UUCUUCU---------------GGUACUg -5'
1560 5' -50.8 NC_001347.2 + 154579 0.66 0.995906
Target:  5'- -aGuGCAGGUgGAAaucGAAGACCGUGAg -3'
miRNA:   3'- ucCuCGUCCGaUUU---CUUCUGGUACUg -5'
1560 5' -50.8 NC_001347.2 + 142306 0.67 0.995221
Target:  5'- cAGGAGCAgGGCgu-GGAGGACUuuucGCu -3'
miRNA:   3'- -UCCUCGU-CCGauuUCUUCUGGuac-UG- -5'
1560 5' -50.8 NC_001347.2 + 191435 0.67 0.995221
Target:  5'- uGGAGCAGaGCagAAAGAAGAgCucGGCg -3'
miRNA:   3'- uCCUCGUC-CGa-UUUCUUCUgGuaCUG- -5'
1560 5' -50.8 NC_001347.2 + 195324 0.67 0.994446
Target:  5'- cGGGGGCGucGUgaaGGAGGAGACUGUGAUg -3'
miRNA:   3'- -UCCUCGUc-CGa--UUUCUUCUGGUACUG- -5'
1560 5' -50.8 NC_001347.2 + 170366 0.67 0.992591
Target:  5'- cAGGAGCcGGCgc-GGGAGcuGCCGUccGACa -3'
miRNA:   3'- -UCCUCGuCCGauuUCUUC--UGGUA--CUG- -5'
1560 5' -50.8 NC_001347.2 + 79345 0.68 0.990273
Target:  5'- cGGAGCacGGGCUGcuGGucuCCAUGGCc -3'
miRNA:   3'- uCCUCG--UCCGAUuuCUucuGGUACUG- -5'
1560 5' -50.8 NC_001347.2 + 143912 0.68 0.98678
Target:  5'- uGGAGCAGGaccugcuGGACC-UGACa -3'
miRNA:   3'- uCCUCGUCCgauuucuUCUGGuACUG- -5'
1560 5' -50.8 NC_001347.2 + 135306 0.68 0.985773
Target:  5'- gGGGAGCAGcGggGGAGggGAgCGUcacggGACa -3'
miRNA:   3'- -UCCUCGUC-CgaUUUCuuCUgGUA-----CUG- -5'
1560 5' -50.8 NC_001347.2 + 47574 0.68 0.983964
Target:  5'- gGGGAGaGGGCcugucGGAGAuGGCCGUGAg -3'
miRNA:   3'- -UCCUCgUCCGa----UUUCUuCUGGUACUg -5'
1560 5' -50.8 NC_001347.2 + 153633 0.69 0.977488
Target:  5'- gGGGuGCAGGCguccGAAGAGcacGGCCucguugGUGACg -3'
miRNA:   3'- -UCCuCGUCCGa---UUUCUU---CUGG------UACUG- -5'
1560 5' -50.8 NC_001347.2 + 191271 0.69 0.977488
Target:  5'- -cGGGCAGGCgugcggcacGAAGGGcACCAUGACc -3'
miRNA:   3'- ucCUCGUCCGa--------UUUCUUcUGGUACUG- -5'
1560 5' -50.8 NC_001347.2 + 155602 0.69 0.974952
Target:  5'- gGGGAGguGGUgacGAcGAGGACgGUGAa -3'
miRNA:   3'- -UCCUCguCCGa--UUuCUUCUGgUACUg -5'
1560 5' -50.8 NC_001347.2 + 184983 0.7 0.962714
Target:  5'- uGGGcuGCAGGCggcagcGGAuacuGGCCGUGACu -3'
miRNA:   3'- -UCCu-CGUCCGauu---UCUu---CUGGUACUG- -5'
1560 5' -50.8 NC_001347.2 + 8787 0.7 0.959097
Target:  5'- cGGAGCcGGCUcAGAGcGGACCAcgguUGAUu -3'
miRNA:   3'- uCCUCGuCCGA-UUUCuUCUGGU----ACUG- -5'
1560 5' -50.8 NC_001347.2 + 56286 0.71 0.945481
Target:  5'- gGGGAGCGGGCUugcaccgcugacgcAuuuGGAAGACUuaaGGCa -3'
miRNA:   3'- -UCCUCGUCCGA--------------Uu--UCUUCUGGua-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.