miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1561 5' -54.7 NC_001347.2 + 14867 0.66 0.973331
Target:  5'- gGCUcGUACGccacGGCCGAacgaaUCCUGGGUUGc -3'
miRNA:   3'- -CGA-CAUGCu---CCGGUU-----AGGGCUCGACu -5'
1561 5' -54.7 NC_001347.2 + 177720 0.66 0.973331
Target:  5'- ----aACGAGGCUcggAcgCCCGAGgUGAa -3'
miRNA:   3'- cgacaUGCUCCGG---UuaGGGCUCgACU- -5'
1561 5' -54.7 NC_001347.2 + 181478 0.66 0.970593
Target:  5'- cCUGUACGAcGCC-AUCaCCGAGaacCUGAu -3'
miRNA:   3'- cGACAUGCUcCGGuUAG-GGCUC---GACU- -5'
1561 5' -54.7 NC_001347.2 + 114378 0.66 0.967659
Target:  5'- aCUGcGCcAGGCCu-UCCCgGGGCUGGa -3'
miRNA:   3'- cGACaUGcUCCGGuuAGGG-CUCGACU- -5'
1561 5' -54.7 NC_001347.2 + 2398 0.68 0.941661
Target:  5'- cGCcgc-CGAGGCCGcgcggcggcugcugCCCGAGCUGGa -3'
miRNA:   3'- -CGacauGCUCCGGUua------------GGGCUCGACU- -5'
1561 5' -54.7 NC_001347.2 + 12317 0.68 0.941207
Target:  5'- gGCUGUugcacuGCGAGGCCA-UCUacggCGAGCa-- -3'
miRNA:   3'- -CGACA------UGCUCCGGUuAGG----GCUCGacu -5'
1561 5' -54.7 NC_001347.2 + 88745 0.68 0.936538
Target:  5'- ----aGCGAGGCCGAgcgagCCCGAGaCcGAa -3'
miRNA:   3'- cgacaUGCUCCGGUUa----GGGCUC-GaCU- -5'
1561 5' -54.7 NC_001347.2 + 40394 0.68 0.936538
Target:  5'- cGCcgGUGCGGGGCCGcgugguggGUCCuCGAGg-GAg -3'
miRNA:   3'- -CGa-CAUGCUCCGGU--------UAGG-GCUCgaCU- -5'
1561 5' -54.7 NC_001347.2 + 89124 0.68 0.931639
Target:  5'- aCUGUAUcGGGUCuguUCCCGAGCg-- -3'
miRNA:   3'- cGACAUGcUCCGGuu-AGGGCUCGacu -5'
1561 5' -54.7 NC_001347.2 + 190136 0.69 0.903688
Target:  5'- aGCgGUACGGGGCCGcaaCCGGGUUc- -3'
miRNA:   3'- -CGaCAUGCUCCGGUuagGGCUCGAcu -5'
1561 5' -54.7 NC_001347.2 + 180433 0.7 0.884199
Target:  5'- gGCUGcACGuGGCCuggCCCGAacGCUGc -3'
miRNA:   3'- -CGACaUGCuCCGGuuaGGGCU--CGACu -5'
1561 5' -54.7 NC_001347.2 + 194117 1.12 0.003998
Target:  5'- cGCUGUACGAGGCCAAUCCCGAGCUGAg -3'
miRNA:   3'- -CGACAUGCUCCGGUUAGGGCUCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.