miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1562 3' -57.6 NC_001347.2 + 137638 0.66 0.937269
Target:  5'- cGACACCagauGgCGCUCGUUGaccaggaaagcUGUCUACGc -3'
miRNA:   3'- cCUGUGG----CgGCGAGCAAC-----------GCGGAUGC- -5'
1562 3' -57.6 NC_001347.2 + 172536 0.66 0.937269
Target:  5'- gGGGC-CCGCUgGCUCGgcGCGgCUGu- -3'
miRNA:   3'- -CCUGuGGCGG-CGAGCaaCGCgGAUgc -5'
1562 3' -57.6 NC_001347.2 + 191820 0.66 0.928124
Target:  5'- gGGAUACCGUCGUgcgaccuuuugaccgCGgugGUGCCUGuCGu -3'
miRNA:   3'- -CCUGUGGCGGCGa--------------GCaa-CGCGGAU-GC- -5'
1562 3' -57.6 NC_001347.2 + 170501 0.66 0.927621
Target:  5'- cGuCACuCGCCGC--GUUGCGaCCUGCu -3'
miRNA:   3'- cCuGUG-GCGGCGagCAACGC-GGAUGc -5'
1562 3' -57.6 NC_001347.2 + 181725 0.66 0.927116
Target:  5'- gGGAUaucccguccugcgACCGCUGCg---UGCGCCgACGg -3'
miRNA:   3'- -CCUG-------------UGGCGGCGagcaACGCGGaUGC- -5'
1562 3' -57.6 NC_001347.2 + 109457 0.66 0.922472
Target:  5'- aGACGCC-CCGCgucaccggCGgcgGCGCCaugGCGg -3'
miRNA:   3'- cCUGUGGcGGCGa-------GCaa-CGCGGa--UGC- -5'
1562 3' -57.6 NC_001347.2 + 103716 0.66 0.922472
Target:  5'- ---gGCUGCUGCgUCGUgacgGCGCCUAa- -3'
miRNA:   3'- ccugUGGCGGCG-AGCAa---CGCGGAUgc -5'
1562 3' -57.6 NC_001347.2 + 112491 0.66 0.922472
Target:  5'- cGACGCCGCCGCg-GUUuC-CUUACGg -3'
miRNA:   3'- cCUGUGGCGGCGagCAAcGcGGAUGC- -5'
1562 3' -57.6 NC_001347.2 + 168364 0.66 0.922472
Target:  5'- cGG-UGCCGCCGCUCuGUucgGCuaUUACGg -3'
miRNA:   3'- -CCuGUGGCGGCGAG-CAa--CGcgGAUGC- -5'
1562 3' -57.6 NC_001347.2 + 97123 0.66 0.917105
Target:  5'- ---aACCGCCGCU---UGCGCCcgagACGg -3'
miRNA:   3'- ccugUGGCGGCGAgcaACGCGGa---UGC- -5'
1562 3' -57.6 NC_001347.2 + 86929 0.66 0.917105
Target:  5'- aGGCGCCGuaGCUCauUUGCGCCg--- -3'
miRNA:   3'- cCUGUGGCggCGAGc-AACGCGGaugc -5'
1562 3' -57.6 NC_001347.2 + 124959 0.66 0.917105
Target:  5'- cGGCGCCGaCUcCUUGUaGCGCCgACGg -3'
miRNA:   3'- cCUGUGGC-GGcGAGCAaCGCGGaUGC- -5'
1562 3' -57.6 NC_001347.2 + 196967 0.67 0.91209
Target:  5'- -cGCGCCGCCGaCgcccgagacggcgcgCGUccaGCGCCUGCu -3'
miRNA:   3'- ccUGUGGCGGC-Ga--------------GCAa--CGCGGAUGc -5'
1562 3' -57.6 NC_001347.2 + 128346 0.67 0.911522
Target:  5'- uGGcCGCCGCUGCUCGa-GCaCCUcACGc -3'
miRNA:   3'- -CCuGUGGCGGCGAGCaaCGcGGA-UGC- -5'
1562 3' -57.6 NC_001347.2 + 2101 0.67 0.911522
Target:  5'- cGGCGCCGCCGg-CGgggGCGCgauUUGCGu -3'
miRNA:   3'- cCUGUGGCGGCgaGCaa-CGCG---GAUGC- -5'
1562 3' -57.6 NC_001347.2 + 16387 0.67 0.905724
Target:  5'- cGGuCAUgaCGCCGacgCGUUGgcCGCCUGCGu -3'
miRNA:   3'- -CCuGUG--GCGGCga-GCAAC--GCGGAUGC- -5'
1562 3' -57.6 NC_001347.2 + 115012 0.67 0.903943
Target:  5'- -aGCGCCGCCGCUCauaaugccgucaccGUcGCGUCcgACGc -3'
miRNA:   3'- ccUGUGGCGGCGAG--------------CAaCGCGGa-UGC- -5'
1562 3' -57.6 NC_001347.2 + 68400 0.67 0.902143
Target:  5'- cGAUACCGCCGCguacaaagaggUGCuCCUGCa -3'
miRNA:   3'- cCUGUGGCGGCGagca-------ACGcGGAUGc -5'
1562 3' -57.6 NC_001347.2 + 106312 0.67 0.899713
Target:  5'- cGGCGCCGCCGCUCacuuuccuCGCCa--- -3'
miRNA:   3'- cCUGUGGCGGCGAGcaac----GCGGaugc -5'
1562 3' -57.6 NC_001347.2 + 38000 0.67 0.899713
Target:  5'- cGGGCagcaGCCGCCGCgcggccucggCGgcggGCGCCgacucGCGu -3'
miRNA:   3'- -CCUG----UGGCGGCGa---------GCaa--CGCGGa----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.