miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1562 5' -57.7 NC_001347.2 + 16922 0.66 0.917715
Target:  5'- gACCGCGAcuacGCGCGgcaguuucGCUGGCUCU-GUCg -3'
miRNA:   3'- -UGGCGCUc---CGCGU--------UGACUGGGAgUAG- -5'
1562 5' -57.7 NC_001347.2 + 86287 0.66 0.893786
Target:  5'- uGCCGCugacccaaaauGucGCGCA---GACCCUCGUCg -3'
miRNA:   3'- -UGGCG-----------CucCGCGUugaCUGGGAGUAG- -5'
1562 5' -57.7 NC_001347.2 + 104530 0.66 0.88726
Target:  5'- cCCGCGcGGGCGUGccuccugcauGCUGGCCgUCgAUCc -3'
miRNA:   3'- uGGCGC-UCCGCGU----------UGACUGGgAG-UAG- -5'
1562 5' -57.7 NC_001347.2 + 125840 0.67 0.880522
Target:  5'- cAUCGUGccGGCGCGACgaUGACgCUCGUUc -3'
miRNA:   3'- -UGGCGCu-CCGCGUUG--ACUGgGAGUAG- -5'
1562 5' -57.7 NC_001347.2 + 73730 0.67 0.86643
Target:  5'- cGCCGCcgGAGGCGCggUU--CCCUC-UCu -3'
miRNA:   3'- -UGGCG--CUCCGCGuuGAcuGGGAGuAG- -5'
1562 5' -57.7 NC_001347.2 + 82820 0.67 0.86643
Target:  5'- aACCGCGucguGaGCGCGGC-GGCUCcCAUCg -3'
miRNA:   3'- -UGGCGCu---C-CGCGUUGaCUGGGaGUAG- -5'
1562 5' -57.7 NC_001347.2 + 165577 0.67 0.859084
Target:  5'- aACCGCGAcuccaggcGGCGCGGCa---CUUCGUCg -3'
miRNA:   3'- -UGGCGCU--------CCGCGUUGacugGGAGUAG- -5'
1562 5' -57.7 NC_001347.2 + 99542 0.67 0.843821
Target:  5'- gGCCGgGucGCGCGGCagugacagcuugUGACCCgcgcUCGUCg -3'
miRNA:   3'- -UGGCgCucCGCGUUG------------ACUGGG----AGUAG- -5'
1562 5' -57.7 NC_001347.2 + 189025 0.67 0.843821
Target:  5'- gGCCGCGcgaacGCGCGug-GGCCCUCAa- -3'
miRNA:   3'- -UGGCGCuc---CGCGUugaCUGGGAGUag -5'
1562 5' -57.7 NC_001347.2 + 925 0.67 0.843821
Target:  5'- gGCCGCGGGGC-CGGagGGCCUUCGg- -3'
miRNA:   3'- -UGGCGCUCCGcGUUgaCUGGGAGUag -5'
1562 5' -57.7 NC_001347.2 + 107358 0.68 0.835915
Target:  5'- gGCUGCGAcgcgaaacGGUGCGAC-GACCCUUcuuuUCg -3'
miRNA:   3'- -UGGCGCU--------CCGCGUUGaCUGGGAGu---AG- -5'
1562 5' -57.7 NC_001347.2 + 191843 0.68 0.835915
Target:  5'- gACCGCGGuGGUGC--CUGucgUCCUCGUCu -3'
miRNA:   3'- -UGGCGCU-CCGCGuuGACu--GGGAGUAG- -5'
1562 5' -57.7 NC_001347.2 + 148824 0.68 0.835915
Target:  5'- gGCCGUGuccuuGGCGCGA--GACCCUgGUg -3'
miRNA:   3'- -UGGCGCu----CCGCGUUgaCUGGGAgUAg -5'
1562 5' -57.7 NC_001347.2 + 176429 0.68 0.827836
Target:  5'- cGCCGUGuaccaccaAGGCGaca-UGGCCCUCAUg -3'
miRNA:   3'- -UGGCGC--------UCCGCguugACUGGGAGUAg -5'
1562 5' -57.7 NC_001347.2 + 140903 0.68 0.793921
Target:  5'- aGCCGCGAcgagguggcgGGCGCcACgcaGGCCUUCAa- -3'
miRNA:   3'- -UGGCGCU----------CCGCGuUGa--CUGGGAGUag -5'
1562 5' -57.7 NC_001347.2 + 2062 0.68 0.793921
Target:  5'- aGCCGUGGGGUccgcuGUAcCUGugCCUCcgCa -3'
miRNA:   3'- -UGGCGCUCCG-----CGUuGACugGGAGuaG- -5'
1562 5' -57.7 NC_001347.2 + 107315 0.69 0.785081
Target:  5'- gACCGCaccGAGGCGcCAGCcGACCCaguggCGUUu -3'
miRNA:   3'- -UGGCG---CUCCGC-GUUGaCUGGGa----GUAG- -5'
1562 5' -57.7 NC_001347.2 + 31383 0.7 0.710405
Target:  5'- aGCCGCcauGAGGCgGUGGCUGcgccUCCUCGUCg -3'
miRNA:   3'- -UGGCG---CUCCG-CGUUGACu---GGGAGUAG- -5'
1562 5' -57.7 NC_001347.2 + 8826 0.71 0.681141
Target:  5'- gACCGUG-GGCGCGACgaaACCCacCGUCa -3'
miRNA:   3'- -UGGCGCuCCGCGUUGac-UGGGa-GUAG- -5'
1562 5' -57.7 NC_001347.2 + 112104 0.71 0.661429
Target:  5'- --aGCGAGGCgGCAACUGGCgUUCAc- -3'
miRNA:   3'- uggCGCUCCG-CGUUGACUGgGAGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.