miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15639 5' -42.1 NC_004062.1 + 34193 0.66 1
Target:  5'- aGCAAUg--AACGCAAAucGCGauccugGCCc -3'
miRNA:   3'- gCGUUAacaUUGCGUUU--UGCaaa---CGG- -5'
15639 5' -42.1 NC_004062.1 + 71407 0.66 1
Target:  5'- gGaCAAUU---GCGCuacAAACGUUUGCUg -3'
miRNA:   3'- gC-GUUAAcauUGCGu--UUUGCAAACGG- -5'
15639 5' -42.1 NC_004062.1 + 63580 0.66 1
Target:  5'- cCGCAuaccuagaAAUGCGcAACGUUUGUCg -3'
miRNA:   3'- -GCGUuaaca---UUGCGUuUUGCAAACGG- -5'
15639 5' -42.1 NC_004062.1 + 110055 0.66 1
Target:  5'- gGCAGguuugUGUGugGCAcauACGgaucuucgGCCg -3'
miRNA:   3'- gCGUUa----ACAUugCGUuu-UGCaaa-----CGG- -5'
15639 5' -42.1 NC_004062.1 + 87377 0.66 1
Target:  5'- uCGCAuaagUGUAggGCGCGGGuCGUUUGa- -3'
miRNA:   3'- -GCGUua--ACAU--UGCGUUUuGCAAACgg -5'
15639 5' -42.1 NC_004062.1 + 74671 0.67 1
Target:  5'- cCGCAAccggUGUAAUaCAAuccGGCGUcgGCCa -3'
miRNA:   3'- -GCGUUa---ACAUUGcGUU---UUGCAaaCGG- -5'
15639 5' -42.1 NC_004062.1 + 75440 0.67 1
Target:  5'- -----cUGUAAUGUAAAACGUUUcGCg -3'
miRNA:   3'- gcguuaACAUUGCGUUUUGCAAA-CGg -5'
15639 5' -42.1 NC_004062.1 + 15492 0.67 1
Target:  5'- aGCAAUuuuaaauauuuauucUGUGaauauuuGCGCAAA-CGuUUUGCCg -3'
miRNA:   3'- gCGUUA---------------ACAU-------UGCGUUUuGC-AAACGG- -5'
15639 5' -42.1 NC_004062.1 + 42404 0.67 1
Target:  5'- uCGCGGUg--GGCGCGuuuGACuaUUGCCa -3'
miRNA:   3'- -GCGUUAacaUUGCGUu--UUGcaAACGG- -5'
15639 5' -42.1 NC_004062.1 + 30787 0.68 0.999999
Target:  5'- gCGCAAUaauuguguguauaUGUAuggcacgcccauACGCAuAGCGU-UGCCc -3'
miRNA:   3'- -GCGUUA-------------ACAU------------UGCGUuUUGCAaACGG- -5'
15639 5' -42.1 NC_004062.1 + 30007 0.68 0.999997
Target:  5'- aCGguGUUGU-AUGCA-GACGagUGCCu -3'
miRNA:   3'- -GCguUAACAuUGCGUuUUGCaaACGG- -5'
15639 5' -42.1 NC_004062.1 + 102762 0.69 0.999992
Target:  5'- uCGCAAUUGUAcucaacaaACGCAG--UGUUgGCUg -3'
miRNA:   3'- -GCGUUAACAU--------UGCGUUuuGCAAaCGG- -5'
15639 5' -42.1 NC_004062.1 + 99772 0.7 0.999977
Target:  5'- gGCAAaUGguuGCGCGAAAUG-UUGCa -3'
miRNA:   3'- gCGUUaACau-UGCGUUUUGCaAACGg -5'
15639 5' -42.1 NC_004062.1 + 38065 0.7 0.999956
Target:  5'- gCGUAAUUGUAACaGCGAAACuuccauaauUUUGCa -3'
miRNA:   3'- -GCGUUAACAUUG-CGUUUUGc--------AAACGg -5'
15639 5' -42.1 NC_004062.1 + 93734 0.71 0.999857
Target:  5'- uGCAAaaUGUuuaaugGACGCAAAACGUUggaGCUg -3'
miRNA:   3'- gCGUUa-ACA------UUGCGUUUUGCAAa--CGG- -5'
15639 5' -42.1 NC_004062.1 + 97035 0.72 0.999684
Target:  5'- uCGCGAUUGcGACGgCGAuaaagaagugauAACGUuuUUGCCu -3'
miRNA:   3'- -GCGUUAACaUUGC-GUU------------UUGCA--AACGG- -5'
15639 5' -42.1 NC_004062.1 + 105214 0.72 0.999595
Target:  5'- aGguGUUgGUGACGCcguucAGAgGUUUGCCg -3'
miRNA:   3'- gCguUAA-CAUUGCGu----UUUgCAAACGG- -5'
15639 5' -42.1 NC_004062.1 + 186 0.75 0.996721
Target:  5'- gGUggUUGUcgauGACGCAAGugGU--GCCg -3'
miRNA:   3'- gCGuuAACA----UUGCGUUUugCAaaCGG- -5'
15639 5' -42.1 NC_004062.1 + 52956 0.81 0.921375
Target:  5'- uCGUAggUGUAACGCAuuaAAACGUgccGCCg -3'
miRNA:   3'- -GCGUuaACAUUGCGU---UUUGCAaa-CGG- -5'
15639 5' -42.1 NC_004062.1 + 14653 0.83 0.835484
Target:  5'- cCGCucgUGuUGACGCAAGACG-UUGCCg -3'
miRNA:   3'- -GCGuuaAC-AUUGCGUUUUGCaAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.