miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 88264 0.66 0.905995
Target:  5'- aGCGCgGCGUacgcUGGUCaCGUCGCcguCGCg -3'
miRNA:   3'- -UGCG-CGCA----GCCGGcGCAGCGuuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 85864 0.66 0.905995
Target:  5'- uCGCGCacCGGCuCGCGUCcguGCAucACGUa -3'
miRNA:   3'- uGCGCGcaGCCG-GCGCAG---CGUu-UGCG- -5'
1564 3' -58.8 NC_001347.2 + 15618 0.66 0.905995
Target:  5'- gACGaCGCGUUcGUCGaCG-CGCGAggGCGCg -3'
miRNA:   3'- -UGC-GCGCAGcCGGC-GCaGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 198080 0.66 0.905995
Target:  5'- cUGuCGCGgCGGUCGCGaCGguGACGg -3'
miRNA:   3'- uGC-GCGCaGCCGGCGCaGCguUUGCg -5'
1564 3' -58.8 NC_001347.2 + 229698 0.66 0.905995
Target:  5'- -gGUGUGUCGGCgGUGUgCGCGGccuCGg -3'
miRNA:   3'- ugCGCGCAGCCGgCGCA-GCGUUu--GCg -5'
1564 3' -58.8 NC_001347.2 + 103701 0.66 0.905995
Target:  5'- cACGUGCuuuacaaCGGCUgcuGCGUCGUGAcgGCGCc -3'
miRNA:   3'- -UGCGCGca-----GCCGG---CGCAGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 66504 0.66 0.905995
Target:  5'- aACGcCGCGaucgaggCGGCgGCGaUCGCAGccuccuCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGgCGC-AGCGUUu-----GCG- -5'
1564 3' -58.8 NC_001347.2 + 219 0.66 0.905995
Target:  5'- -gGUGUGUCGGCgGUGUgCGCGGccuCGg -3'
miRNA:   3'- ugCGCGCAGCCGgCGCA-GCGUUu--GCg -5'
1564 3' -58.8 NC_001347.2 + 118202 0.66 0.900044
Target:  5'- cCGCGCauuGUCaccGCCGCGUCcuccaGCAAcCGCc -3'
miRNA:   3'- uGCGCG---CAGc--CGGCGCAG-----CGUUuGCG- -5'
1564 3' -58.8 NC_001347.2 + 156682 0.66 0.900044
Target:  5'- gGCGgGuCGUggCGGCUGUGUCGUuguGAgGCc -3'
miRNA:   3'- -UGCgC-GCA--GCCGGCGCAGCGu--UUgCG- -5'
1564 3' -58.8 NC_001347.2 + 87169 0.66 0.900044
Target:  5'- aACGCGCGU--GCgG-GUCGCAGAUGa -3'
miRNA:   3'- -UGCGCGCAgcCGgCgCAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 90880 0.66 0.896374
Target:  5'- uUGCGCGgagacUCGGCCGCcaagauccaggagCGCu-ACGCg -3'
miRNA:   3'- uGCGCGC-----AGCCGGCGca-----------GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 197932 0.66 0.893886
Target:  5'- gACGaGCGUCcacacaCCGCuuugGUCGUAGACGCa -3'
miRNA:   3'- -UGCgCGCAGcc----GGCG----CAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 161807 0.66 0.893886
Target:  5'- -gGUGCGUagGGuCCGCGgugauuugCGCAAGgGCu -3'
miRNA:   3'- ugCGCGCAg-CC-GGCGCa-------GCGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 101442 0.66 0.893886
Target:  5'- uGCGCGCGcuuaaaaacaCGGCCGa--CGCcaugGAGCGCg -3'
miRNA:   3'- -UGCGCGCa---------GCCGGCgcaGCG----UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 82081 0.66 0.887522
Target:  5'- gGCGUGCcaggaCGGCCuCGUCGUc-GCGCu -3'
miRNA:   3'- -UGCGCGca---GCCGGcGCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 209067 0.66 0.887522
Target:  5'- uCGCGCacCGGCUGCagacaggGCGAACGCa -3'
miRNA:   3'- uGCGCGcaGCCGGCGcag----CGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 210424 0.66 0.887522
Target:  5'- gACG-GCGgucucaaCGGCCGCGgggaacgcacaUCGUAGACGg -3'
miRNA:   3'- -UGCgCGCa------GCCGGCGC-----------AGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 68698 0.66 0.887522
Target:  5'- cAUGaCGCGgCGG-CGCaaagCGCGAGCGCa -3'
miRNA:   3'- -UGC-GCGCaGCCgGCGca--GCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 97395 0.66 0.887522
Target:  5'- cCGCGCGU-GGCacucugcaacaGCGgCGCuAGACGCu -3'
miRNA:   3'- uGCGCGCAgCCGg----------CGCaGCG-UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.