miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 103701 0.66 0.905995
Target:  5'- cACGUGCuuuacaaCGGCUgcuGCGUCGUGAcgGCGCc -3'
miRNA:   3'- -UGCGCGca-----GCCGG---CGCAGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 66504 0.66 0.905995
Target:  5'- aACGcCGCGaucgaggCGGCgGCGaUCGCAGccuccuCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGgCGC-AGCGUUu-----GCG- -5'
1564 3' -58.8 NC_001347.2 + 219 0.66 0.905995
Target:  5'- -gGUGUGUCGGCgGUGUgCGCGGccuCGg -3'
miRNA:   3'- ugCGCGCAGCCGgCGCA-GCGUUu--GCg -5'
1564 3' -58.8 NC_001347.2 + 87169 0.66 0.900044
Target:  5'- aACGCGCGU--GCgG-GUCGCAGAUGa -3'
miRNA:   3'- -UGCGCGCAgcCGgCgCAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 156682 0.66 0.900044
Target:  5'- gGCGgGuCGUggCGGCUGUGUCGUuguGAgGCc -3'
miRNA:   3'- -UGCgC-GCA--GCCGGCGCAGCGu--UUgCG- -5'
1564 3' -58.8 NC_001347.2 + 118202 0.66 0.900044
Target:  5'- cCGCGCauuGUCaccGCCGCGUCcuccaGCAAcCGCc -3'
miRNA:   3'- uGCGCG---CAGc--CGGCGCAG-----CGUUuGCG- -5'
1564 3' -58.8 NC_001347.2 + 90880 0.66 0.896374
Target:  5'- uUGCGCGgagacUCGGCCGCcaagauccaggagCGCu-ACGCg -3'
miRNA:   3'- uGCGCGC-----AGCCGGCGca-----------GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 197932 0.66 0.893886
Target:  5'- gACGaGCGUCcacacaCCGCuuugGUCGUAGACGCa -3'
miRNA:   3'- -UGCgCGCAGcc----GGCG----CAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 94337 0.67 0.862975
Target:  5'- -gGCGuCGUCggaGGCCgguGCGUCGUccucaucuccgccugGAGCGCg -3'
miRNA:   3'- ugCGC-GCAG---CCGG---CGCAGCG---------------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 17130 0.67 0.860094
Target:  5'- cCGC-CGUCGGCCGC--CGCccAUGCc -3'
miRNA:   3'- uGCGcGCAGCCGGCGcaGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 196553 0.67 0.852765
Target:  5'- cCGCGgGcUgGGCCugugccaacccGCGUCGCGGcuACGCc -3'
miRNA:   3'- uGCGCgC-AgCCGG-----------CGCAGCGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 200448 0.67 0.852765
Target:  5'- gACGCGCcuggccuucGUgGGUCGCuUCGUGAACGa -3'
miRNA:   3'- -UGCGCG---------CAgCCGGCGcAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 98048 0.67 0.860094
Target:  5'- aACGcCGCGgcggcagCGGCCGCGgcuuccaucaUCGUGAugcaaaccGCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGGCGC----------AGCGUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 109458 0.67 0.867239
Target:  5'- gACGCcccGCGUcacCGGCgGCGgCGCcAugGCg -3'
miRNA:   3'- -UGCG---CGCA---GCCGgCGCaGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 138701 0.67 0.867239
Target:  5'- -gGUGCGUCGGCUaGCGgucuggUGCGAGagGCu -3'
miRNA:   3'- ugCGCGCAGCCGG-CGCa-----GCGUUUg-CG- -5'
1564 3' -58.8 NC_001347.2 + 150574 0.67 0.867239
Target:  5'- gGCGUuuucaGCGUCGGCUcCGgcaGUAGugGCg -3'
miRNA:   3'- -UGCG-----CGCAGCCGGcGCag-CGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 193830 0.67 0.867239
Target:  5'- gGCGCGCGaucuggggcucUCGGCCuCGaUGCu-GCGCc -3'
miRNA:   3'- -UGCGCGC-----------AGCCGGcGCaGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 85497 0.67 0.867239
Target:  5'- cGCGCaGCGguucgggCGGCUugaGCGggCGCGcGCGCu -3'
miRNA:   3'- -UGCG-CGCa------GCCGG---CGCa-GCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75404 0.67 0.867239
Target:  5'- aGCGggaGCGgCGGCCGUGgcggCgGCAGcgGCGCa -3'
miRNA:   3'- -UGCg--CGCaGCCGGCGCa---G-CGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 113196 0.67 0.852765
Target:  5'- -gGCGUGgCGGCCugacugcgGCuGUCGCccGAACGCu -3'
miRNA:   3'- ugCGCGCaGCCGG--------CG-CAGCG--UUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.