miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 193175 1.1 0.002338
Target:  5'- cACGCGCGUCGGCCGCGUCGCAAACGCu -3'
miRNA:   3'- -UGCGCGCAGCCGGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 156522 0.81 0.189623
Target:  5'- gGCGCGCccgcauGUCGGCCGCGcuuaCGCGAACGg -3'
miRNA:   3'- -UGCGCG------CAGCCGGCGCa---GCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 153241 0.79 0.256194
Target:  5'- gGCGCGCGUCGGCCGgCGacggcgguUCGCcGugGUu -3'
miRNA:   3'- -UGCGCGCAGCCGGC-GC--------AGCGuUugCG- -5'
1564 3' -58.8 NC_001347.2 + 167217 0.78 0.292894
Target:  5'- gGC-CGCGcCGGCCGCGcCGCGagacgGACGCa -3'
miRNA:   3'- -UGcGCGCaGCCGGCGCaGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75853 0.77 0.333573
Target:  5'- aACGa-CGUCGGCCGCGgggCGCA-GCGCc -3'
miRNA:   3'- -UGCgcGCAGCCGGCGCa--GCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 191681 0.75 0.448896
Target:  5'- cACGCaGCGaccguaguugucgCGGuCCGCGUCGCGuAGCGCu -3'
miRNA:   3'- -UGCG-CGCa------------GCC-GGCGCAGCGU-UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 151085 0.75 0.44373
Target:  5'- cACGCGCaUCGGUCGCGacaUGCuaGAGCGCa -3'
miRNA:   3'- -UGCGCGcAGCCGGCGCa--GCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 200609 0.74 0.487749
Target:  5'- uGCGCGCGUCgGGCUGCG-CGCcguCGa -3'
miRNA:   3'- -UGCGCGCAG-CCGGCGCaGCGuuuGCg -5'
1564 3' -58.8 NC_001347.2 + 83867 0.74 0.496801
Target:  5'- uACGaCGUGUCGcGCCGUccgcuacuuUCGCGGACGCg -3'
miRNA:   3'- -UGC-GCGCAGC-CGGCGc--------AGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 157 0.74 0.469883
Target:  5'- -gGUGUGUCGuGCCggguGUGUCGCGGGCGUg -3'
miRNA:   3'- ugCGCGCAGC-CGG----CGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 229636 0.74 0.469883
Target:  5'- -gGUGUGUCGuGCCggguGUGUCGCGGGCGUg -3'
miRNA:   3'- ugCGCGCAGC-CGG----CGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 105960 0.73 0.543105
Target:  5'- aGCGCaGCGUCGgcgaGCCGCGcaCGCccGCGCg -3'
miRNA:   3'- -UGCG-CGCAGC----CGGCGCa-GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 195640 0.73 0.524391
Target:  5'- gUGCGCGcCGGCCuguuGUGUCGC--ACGCc -3'
miRNA:   3'- uGCGCGCaGCCGG----CGCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 87003 0.73 0.533719
Target:  5'- aACGCGCGgcaGGCCGCGcCgGCGugcuuaaagagcAACGCc -3'
miRNA:   3'- -UGCGCGCag-CCGGCGCaG-CGU------------UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 82810 0.73 0.505928
Target:  5'- gACGUGC-UCaaaCCGCGUCGUGAGCGCg -3'
miRNA:   3'- -UGCGCGcAGcc-GGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 229604 0.73 0.533719
Target:  5'- -gGUGUGUCaGGgUGUGUCGCGGGCGUg -3'
miRNA:   3'- ugCGCGCAG-CCgGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 229548 0.73 0.524391
Target:  5'- gUGUGUGcCGGgUGUGUCGCGGGCGUg -3'
miRNA:   3'- uGCGCGCaGCCgGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 142261 0.73 0.505928
Target:  5'- uGCGagGCGcUGGCCGCGUCGCuGAUGg -3'
miRNA:   3'- -UGCg-CGCaGCCGGCGCAGCGuUUGCg -5'
1564 3' -58.8 NC_001347.2 + 69 0.73 0.524391
Target:  5'- gUGUGUGcCGGgUGUGUCGCGGGCGUg -3'
miRNA:   3'- uGCGCGCaGCCgGCGCAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 130129 0.73 0.515126
Target:  5'- uCGCGCGU-GGCCGUcUCGCu-ACGCc -3'
miRNA:   3'- uGCGCGCAgCCGGCGcAGCGuuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.