Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1564 | 3' | -58.8 | NC_001347.2 | + | 82810 | 0.73 | 0.505928 |
Target: 5'- gACGUGC-UCaaaCCGCGUCGUGAGCGCg -3' miRNA: 3'- -UGCGCGcAGcc-GGCGCAGCGUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 183470 | 0.73 | 0.533719 |
Target: 5'- aGCGCGCcUCGGCCucgggagacGCG-CGCAgccccAGCGCg -3' miRNA: 3'- -UGCGCGcAGCCGG---------CGCaGCGU-----UUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 2483 | 0.72 | 0.571566 |
Target: 5'- cCGCGCGcCGcGCUGUGggcgCGCGAGcCGCa -3' miRNA: 3'- uGCGCGCaGC-CGGCGCa---GCGUUU-GCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 225525 | 0.72 | 0.562034 |
Target: 5'- gGCGgGCGaaUCGGCCGgcugGUCGUcgGCGCu -3' miRNA: 3'- -UGCgCGC--AGCCGGCg---CAGCGuuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 75989 | 0.72 | 0.562034 |
Target: 5'- -aGCGgGUCGGCCaGC-UCGCAGagcuccugguacGCGCg -3' miRNA: 3'- ugCGCgCAGCCGG-CGcAGCGUU------------UGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 17025 | 0.72 | 0.590739 |
Target: 5'- gGCGCGCGU-GGuCCGCGgcgacuUCGCgGAACGUc -3' miRNA: 3'- -UGCGCGCAgCC-GGCGC------AGCG-UUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 183244 | 0.72 | 0.590739 |
Target: 5'- aGCGCGUGUCGcaGCUGCaaguGUCGCA-GCGUc -3' miRNA: 3'- -UGCGCGCAGC--CGGCG----CAGCGUuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 154809 | 0.72 | 0.600369 |
Target: 5'- aGCGCGUGUCgauGGCCaGCGgcgCGCAcaguCGCc -3' miRNA: 3'- -UGCGCGCAG---CCGG-CGCa--GCGUuu--GCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 169128 | 0.72 | 0.600369 |
Target: 5'- cCGCGCG-C-GCCGCGcUGCAGugGCu -3' miRNA: 3'- uGCGCGCaGcCGGCGCaGCGUUugCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 90221 | 0.71 | 0.648709 |
Target: 5'- gACG-GCGU-GGCgGCGUCGUuuuucgGAGCGCg -3' miRNA: 3'- -UGCgCGCAgCCGgCGCAGCG------UUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 110521 | 0.71 | 0.658368 |
Target: 5'- gGCGCgGCGgcgaagaaaaUCGGCCGCGaaUGgAAGCGCg -3' miRNA: 3'- -UGCG-CGC----------AGCCGGCGCa-GCgUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 166123 | 0.71 | 0.63807 |
Target: 5'- -gGCGCGauccgcuUCGGCCGcCGcCGCA-ACGCc -3' miRNA: 3'- ugCGCGC-------AGCCGGC-GCaGCGUuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 1820 | 0.71 | 0.636135 |
Target: 5'- gGCGCaguacgagccguucGCGUCGGCgccgcacccCGCGUCGCugcuGACGg -3' miRNA: 3'- -UGCG--------------CGCAGCCG---------GCGCAGCGu---UUGCg -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 99999 | 0.71 | 0.668009 |
Target: 5'- cGCGgGCG-CGGUCGCGaUGCAGcugagccaguACGCg -3' miRNA: 3'- -UGCgCGCaGCCGGCGCaGCGUU----------UGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 192241 | 0.71 | 0.639037 |
Target: 5'- aAC-CGCGUCGGCCuCGcCGgccCGAGCGCg -3' miRNA: 3'- -UGcGCGCAGCCGGcGCaGC---GUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 98003 | 0.71 | 0.648709 |
Target: 5'- aACGcCGCGUCGuGCCaacccgGCGUCG--GACGCu -3' miRNA: 3'- -UGC-GCGCAGC-CGG------CGCAGCguUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 16398 | 0.71 | 0.647742 |
Target: 5'- cCGaCGCGUUGGCCGCcugCGUuggcgaacaccacGGACGCg -3' miRNA: 3'- uGC-GCGCAGCCGGCGca-GCG-------------UUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 173973 | 0.71 | 0.629361 |
Target: 5'- -aGCGCG--GGCCGCGUgccUGgGAACGCg -3' miRNA: 3'- ugCGCGCagCCGGCGCA---GCgUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 150918 | 0.71 | 0.619687 |
Target: 5'- uCGCaGCGgCGuGCCGUG-CGCGAAUGCa -3' miRNA: 3'- uGCG-CGCaGC-CGGCGCaGCGUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 152044 | 0.71 | 0.639037 |
Target: 5'- gGCGCGgaaaccacCGUCGGCCGUGU-GCAAcuACGa -3' miRNA: 3'- -UGCGC--------GCAGCCGGCGCAgCGUU--UGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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