miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 193225 0.7 0.706238
Target:  5'- cACGCGCGacUUGGCCGaccugUGCGugcGACGCg -3'
miRNA:   3'- -UGCGCGC--AGCCGGCgca--GCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 208113 0.7 0.706238
Target:  5'- gACG-GCGga-GCCGCGUCGCucgccGGCGCu -3'
miRNA:   3'- -UGCgCGCagcCGGCGCAGCGu----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 80834 0.7 0.725047
Target:  5'- cCGCccucGCGU-GGuCCGCGUCGCccACGCc -3'
miRNA:   3'- uGCG----CGCAgCC-GGCGCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 38277 0.7 0.715675
Target:  5'- cGCGUGCG-CGuCCGCGUuaggcaCGCAAAuCGCg -3'
miRNA:   3'- -UGCGCGCaGCcGGCGCA------GCGUUU-GCG- -5'
1564 3' -58.8 NC_001347.2 + 148624 0.7 0.715675
Target:  5'- uCGCGgGU-GGCCgGCGUCaGCGuuCGCa -3'
miRNA:   3'- uGCGCgCAgCCGG-CGCAG-CGUuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 208629 0.7 0.715675
Target:  5'- uCGgGCGUCcacaGGuaCCGCGUCuGUGAGCGCg -3'
miRNA:   3'- uGCgCGCAG----CC--GGCGCAG-CGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 2349 0.7 0.715675
Target:  5'- uGCGCGCGggCGuGCUGgGcgCGCuGGCGCu -3'
miRNA:   3'- -UGCGCGCa-GC-CGGCgCa-GCGuUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 165661 0.7 0.687205
Target:  5'- uCGCGC-UCaGCCGCG-CGUccAGACGCg -3'
miRNA:   3'- uGCGCGcAGcCGGCGCaGCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 163957 0.7 0.687205
Target:  5'- cACGCGCGUCagcaGCUGCGUgCuCAGACGg -3'
miRNA:   3'- -UGCGCGCAGc---CGGCGCA-GcGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 195384 0.7 0.696746
Target:  5'- cCGC-CGUCGcuCCGCGUCGCuu-CGCc -3'
miRNA:   3'- uGCGcGCAGCc-GGCGCAGCGuuuGCG- -5'
1564 3' -58.8 NC_001347.2 + 38013 0.7 0.687205
Target:  5'- cCGCGCGgccUCGGCgGCGggcgccgacUCGCGucccAGCGCc -3'
miRNA:   3'- uGCGCGC---AGCCGgCGC---------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 139240 0.7 0.687205
Target:  5'- gACGUGCaUCGGCUGUG-CGaGGACGCc -3'
miRNA:   3'- -UGCGCGcAGCCGGCGCaGCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 80191 0.7 0.677624
Target:  5'- uUGCGCGUCaaCCGCca-GCGAGCGCa -3'
miRNA:   3'- uGCGCGCAGccGGCGcagCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 77311 0.7 0.687205
Target:  5'- uUGgGCGUgGGCCGCGgCGUGGAUGa -3'
miRNA:   3'- uGCgCGCAgCCGGCGCaGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 39154 0.7 0.696746
Target:  5'- uGCcCGCGUCGcGCUGCGaccacuugCGCAuGGCGCg -3'
miRNA:   3'- -UGcGCGCAGC-CGGCGCa-------GCGU-UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 31668 0.7 0.695794
Target:  5'- gGCuCGgGUCGGCUGgucgggcCGUCGCGGACGa -3'
miRNA:   3'- -UGcGCgCAGCCGGC-------GCAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 166429 0.7 0.696746
Target:  5'- -gGCGUGUCGGCUuacuuccucuGUGUCGCugcugaucuGACGUa -3'
miRNA:   3'- ugCGCGCAGCCGG----------CGCAGCGu--------UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 153324 0.7 0.696746
Target:  5'- aGCuCGCGUUGGCgGCGcUUGCGgagcagggAGCGCa -3'
miRNA:   3'- -UGcGCGCAGCCGgCGC-AGCGU--------UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 802 0.7 0.706238
Target:  5'- cCGCGUGUCuaaaCCGCGugcUCGCuGACGCg -3'
miRNA:   3'- uGCGCGCAGcc--GGCGC---AGCGuUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 156836 0.69 0.733422
Target:  5'- cCGCGCGUCGGCCucuggaggagcacGUgaGUCGUcgGCGa -3'
miRNA:   3'- uGCGCGCAGCCGG-------------CG--CAGCGuuUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.