Results 61 - 80 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1564 | 3' | -58.8 | NC_001347.2 | + | 183675 | 0.69 | 0.779507 |
Target: 5'- -aGCaCGUCGaGCUGCGUgCGCAGGuccCGCa -3' miRNA: 3'- ugCGcGCAGC-CGGCGCA-GCGUUU---GCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 2215 | 0.69 | 0.761744 |
Target: 5'- -gGCGgGUcCGGCgGCGUCGgGGaccgugccGCGCg -3' miRNA: 3'- ugCGCgCA-GCCGgCGCAGCgUU--------UGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 1873 | 0.69 | 0.733422 |
Target: 5'- cCGUGCGUCGGCaccugaaccaGCGUCugugcugcggcugGCuGGCGCu -3' miRNA: 3'- uGCGCGCAGCCGg---------CGCAG-------------CGuUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 129201 | 0.69 | 0.761744 |
Target: 5'- aGCGaCGCGU-GGCCGCGUcCGCcu-CGg -3' miRNA: 3'- -UGC-GCGCAgCCGGCGCA-GCGuuuGCg -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 182206 | 0.69 | 0.752704 |
Target: 5'- uGCGgGUGgcgGGCUGCGUCGCcuucgguGACGUc -3' miRNA: 3'- -UGCgCGCag-CCGGCGCAGCGu------UUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 2141 | 0.69 | 0.752704 |
Target: 5'- gACGCGCacgCGGUgGuCGggGCGGACGCg -3' miRNA: 3'- -UGCGCGca-GCCGgC-GCagCGUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 86265 | 0.69 | 0.735274 |
Target: 5'- gGCGCGCGaagcuUCGGCgGCGUgcCGCugacccaaaaugucGCGCa -3' miRNA: 3'- -UGCGCGC-----AGCCGgCGCA--GCGuu------------UGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 15358 | 0.69 | 0.74357 |
Target: 5'- gACGcCGCGUUGcCCgaugaGCGaCGCGAGCGCg -3' miRNA: 3'- -UGC-GCGCAGCcGG-----CGCaGCGUUUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 99530 | 0.69 | 0.74357 |
Target: 5'- aACGCGaucugCGGCCGgGUCGCGcg-GCa -3' miRNA: 3'- -UGCGCgca--GCCGGCgCAGCGUuugCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 156836 | 0.69 | 0.733422 |
Target: 5'- cCGCGCGUCGGCCucuggaggagcacGUgaGUCGUcgGCGa -3' miRNA: 3'- uGCGCGCAGCCGG-------------CG--CAGCGuuUGCg -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 37924 | 0.69 | 0.779507 |
Target: 5'- gGCGCccacaGCG-CGGCgCGCGggUGCAggUGCa -3' miRNA: 3'- -UGCG-----CGCaGCCG-GCGCa-GCGUuuGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 1308 | 0.68 | 0.806086 |
Target: 5'- uACGCGCGggugacGCCGCGcagccagaugaacggCGUggGCGCg -3' miRNA: 3'- -UGCGCGCagc---CGGCGCa--------------GCGuuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 228705 | 0.68 | 0.821721 |
Target: 5'- uUGCGCuGUCGGCC-CaGUCGCcacCGCc -3' miRNA: 3'- uGCGCG-CAGCCGGcG-CAGCGuuuGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 128850 | 0.68 | 0.821721 |
Target: 5'- aGCGCGaaCGcCGcGCC-CGUCGCGcacGGCGCu -3' miRNA: 3'- -UGCGC--GCaGC-CGGcGCAGCGU---UUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 81592 | 0.68 | 0.821721 |
Target: 5'- uCGC-CGcCGGCCG-GUCGCu--CGCg -3' miRNA: 3'- uGCGcGCaGCCGGCgCAGCGuuuGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 187350 | 0.68 | 0.821721 |
Target: 5'- uGCGuUGCGU-GGCCGUGgCGCGu-CGCg -3' miRNA: 3'- -UGC-GCGCAgCCGGCGCaGCGUuuGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 126654 | 0.68 | 0.813558 |
Target: 5'- cACGCGCG-CGGuuGC-UCGaguaccGGCGCg -3' miRNA: 3'- -UGCGCGCaGCCggCGcAGCgu----UUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 183184 | 0.68 | 0.813558 |
Target: 5'- -aGCGCGUCGcaaaGCCG-GUUGCA-GCGUu -3' miRNA: 3'- ugCGCGCAGC----CGGCgCAGCGUuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 126492 | 0.68 | 0.813558 |
Target: 5'- aGCGCGUGUCcgcuuucguGGCguaCGcCGUCGC--GCGCa -3' miRNA: 3'- -UGCGCGCAG---------CCG---GC-GCAGCGuuUGCG- -5' |
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1564 | 3' | -58.8 | NC_001347.2 | + | 77516 | 0.68 | 0.805248 |
Target: 5'- -gGCGCGU-GGCCGaggaguggaaGUUGCAcgcGGCGCu -3' miRNA: 3'- ugCGCGCAgCCGGCg---------CAGCGU---UUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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