miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 126654 0.68 0.813558
Target:  5'- cACGCGCG-CGGuuGC-UCGaguaccGGCGCg -3'
miRNA:   3'- -UGCGCGCaGCCggCGcAGCgu----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 183184 0.68 0.813558
Target:  5'- -aGCGCGUCGcaaaGCCG-GUUGCA-GCGUu -3'
miRNA:   3'- ugCGCGCAGC----CGGCgCAGCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 126492 0.68 0.813558
Target:  5'- aGCGCGUGUCcgcuuucguGGCguaCGcCGUCGC--GCGCa -3'
miRNA:   3'- -UGCGCGCAG---------CCG---GC-GCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 155253 0.68 0.813558
Target:  5'- aACGCGaaaCGGCCuGuCGUUGCGGACuGCa -3'
miRNA:   3'- -UGCGCgcaGCCGG-C-GCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 77516 0.68 0.805248
Target:  5'- -gGCGCGU-GGCCGaggaguggaaGUUGCAcgcGGCGCu -3'
miRNA:   3'- ugCGCGCAgCCGGCg---------CAGCGU---UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 1308 0.68 0.806086
Target:  5'- uACGCGCGggugacGCCGCGcagccagaugaacggCGUggGCGCg -3'
miRNA:   3'- -UGCGCGCagc---CGGCGCa--------------GCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 100127 0.68 0.796799
Target:  5'- aACGCGCa-CGG-CGC-UUGCGGACGCa -3'
miRNA:   3'- -UGCGCGcaGCCgGCGcAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 37036 0.68 0.796799
Target:  5'- gGCGUGUGuuugacauuuuuUCGGCCGCGgaggUGCuGGCGg -3'
miRNA:   3'- -UGCGCGC------------AGCCGGCGCa---GCGuUUGCg -5'
1564 3' -58.8 NC_001347.2 + 93647 0.68 0.788216
Target:  5'- uACGCGCGaccucgucgCGGUCGUGcggaUCGguGGCGUa -3'
miRNA:   3'- -UGCGCGCa--------GCCGGCGC----AGCguUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 208076 0.68 0.788216
Target:  5'- uGC-CGCGUCGGguaCCGCuGcCGCAGauggGCGCa -3'
miRNA:   3'- -UGcGCGCAGCC---GGCG-CaGCGUU----UGCG- -5'
1564 3' -58.8 NC_001347.2 + 78661 0.68 0.796799
Target:  5'- uGCcCGUGUUggaGGCCGUG-CGCAAgGCGCg -3'
miRNA:   3'- -UGcGCGCAG---CCGGCGCaGCGUU-UGCG- -5'
1564 3' -58.8 NC_001347.2 + 166283 0.67 0.874195
Target:  5'- aGCGCGCGUUGcaCCGCGguaaCGacGGCGCc -3'
miRNA:   3'- -UGCGCGCAGCc-GGCGCa---GCguUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 75404 0.67 0.867239
Target:  5'- aGCGggaGCGgCGGCCGUGgcggCgGCAGcgGCGCa -3'
miRNA:   3'- -UGCg--CGCaGCCGGCGCa---G-CGUU--UGCG- -5'
1564 3' -58.8 NC_001347.2 + 85497 0.67 0.867239
Target:  5'- cGCGCaGCGguucgggCGGCUugaGCGggCGCGcGCGCu -3'
miRNA:   3'- -UGCG-CGCa------GCCGG---CGCa-GCGUuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 18956 0.67 0.847528
Target:  5'- gGCGCGCGcaagacaaccagaacUgGGCCuuccccucucacaGCGUCG-AAACGCu -3'
miRNA:   3'- -UGCGCGC---------------AgCCGG-------------CGCAGCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 158983 0.67 0.845257
Target:  5'- uUGCGCaugGUa-GCCGUGUCGCGcacccGGCGCu -3'
miRNA:   3'- uGCGCG---CAgcCGGCGCAGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 79060 0.67 0.845257
Target:  5'- -gGCGCGUCGgcgccaaaugaGCCGCGaagCGgCGGGCGg -3'
miRNA:   3'- ugCGCGCAGC-----------CGGCGCa--GC-GUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 36780 0.67 0.845257
Target:  5'- cACGCGCuacGUa-GCCG-GUCGCGGACcGCg -3'
miRNA:   3'- -UGCGCG---CAgcCGGCgCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 1207 0.67 0.838352
Target:  5'- gGCGCGCGgcguUUuuggccaacagcacgGGCCGCGccaugcgcaaguggUCGCAgcgcGACGCg -3'
miRNA:   3'- -UGCGCGC----AG---------------CCGGCGC--------------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 226759 0.67 0.837577
Target:  5'- uCG-GCGUCGgcauGCCGCugaUCGCAGugGCc -3'
miRNA:   3'- uGCgCGCAGC----CGGCGc--AGCGUUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.