miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1564 3' -58.8 NC_001347.2 + 94337 0.67 0.862975
Target:  5'- -gGCGuCGUCggaGGCCgguGCGUCGUccucaucuccgccugGAGCGCg -3'
miRNA:   3'- ugCGC-GCAG---CCGG---CGCAGCG---------------UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 200448 0.67 0.852765
Target:  5'- gACGCGCcuggccuucGUgGGUCGCuUCGUGAACGa -3'
miRNA:   3'- -UGCGCG---------CAgCCGGCGcAGCGUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 76621 0.67 0.852765
Target:  5'- gGCG-GCGgcugCGGCCGCG--GCGGAgGCc -3'
miRNA:   3'- -UGCgCGCa---GCCGGCGCagCGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 18956 0.67 0.847528
Target:  5'- gGCGCGCGcaagacaaccagaacUgGGCCuuccccucucacaGCGUCG-AAACGCu -3'
miRNA:   3'- -UGCGCGC---------------AgCCGG-------------CGCAGCgUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 190839 0.67 0.845257
Target:  5'- aGCGCGCGgcauguugCGcGCCGUGaucUUGUccgAGACGCg -3'
miRNA:   3'- -UGCGCGCa-------GC-CGGCGC---AGCG---UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 158983 0.67 0.845257
Target:  5'- uUGCGCaugGUa-GCCGUGUCGCGcacccGGCGCu -3'
miRNA:   3'- uGCGCG---CAgcCGGCGCAGCGU-----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 36780 0.67 0.845257
Target:  5'- cACGCGCuacGUa-GCCG-GUCGCGGACcGCg -3'
miRNA:   3'- -UGCGCG---CAgcCGGCgCAGCGUUUG-CG- -5'
1564 3' -58.8 NC_001347.2 + 1207 0.67 0.838352
Target:  5'- gGCGCGCGgcguUUuuggccaacagcacgGGCCGCGccaugcgcaaguggUCGCAgcgcGACGCg -3'
miRNA:   3'- -UGCGCGC----AG---------------CCGGCGC--------------AGCGU----UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 226759 0.67 0.837577
Target:  5'- uCG-GCGUCGgcauGCCGCugaUCGCAGugGCc -3'
miRNA:   3'- uGCgCGCAGC----CGGCGc--AGCGUUugCG- -5'
1564 3' -58.8 NC_001347.2 + 98048 0.67 0.860094
Target:  5'- aACGcCGCGgcggcagCGGCCGCGgcuuccaucaUCGUGAugcaaaccGCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGGCGC----------AGCGUU--------UGCG- -5'
1564 3' -58.8 NC_001347.2 + 79060 0.67 0.845257
Target:  5'- -gGCGCGUCGgcgccaaaugaGCCGCGaagCGgCGGGCGg -3'
miRNA:   3'- ugCGCGCAGC-----------CGGCGCa--GC-GUUUGCg -5'
1564 3' -58.8 NC_001347.2 + 113196 0.67 0.852765
Target:  5'- -gGCGUGgCGGCCugacugcgGCuGUCGCccGAACGCu -3'
miRNA:   3'- ugCGCGCaGCCGG--------CG-CAGCG--UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 66504 0.66 0.905995
Target:  5'- aACGcCGCGaucgaggCGGCgGCGaUCGCAGccuccuCGCu -3'
miRNA:   3'- -UGC-GCGCa------GCCGgCGC-AGCGUUu-----GCG- -5'
1564 3' -58.8 NC_001347.2 + 197932 0.66 0.893886
Target:  5'- gACGaGCGUCcacacaCCGCuuugGUCGUAGACGCa -3'
miRNA:   3'- -UGCgCGCAGcc----GGCG----CAGCGUUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 161807 0.66 0.893886
Target:  5'- -gGUGCGUagGGuCCGCGgugauuugCGCAAGgGCu -3'
miRNA:   3'- ugCGCGCAg-CC-GGCGCa-------GCGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 101442 0.66 0.893886
Target:  5'- uGCGCGCGcuuaaaaacaCGGCCGa--CGCcaugGAGCGCg -3'
miRNA:   3'- -UGCGCGCa---------GCCGGCgcaGCG----UUUGCG- -5'
1564 3' -58.8 NC_001347.2 + 38752 0.66 0.887522
Target:  5'- aGCGC-CGgcugaGGCagcaGCGUCGC--GCGCg -3'
miRNA:   3'- -UGCGcGCag---CCGg---CGCAGCGuuUGCG- -5'
1564 3' -58.8 NC_001347.2 + 183133 0.66 0.880958
Target:  5'- aGCGUGacgaaaGUCuGCCGCGUCuCGGGgGCu -3'
miRNA:   3'- -UGCGCg-----CAGcCGGCGCAGcGUUUgCG- -5'
1564 3' -58.8 NC_001347.2 + 51253 0.66 0.883608
Target:  5'- cCGgGCGUUGGCCuguggauagauuucuGCGUguacCGCuacAACGCg -3'
miRNA:   3'- uGCgCGCAGCCGG---------------CGCA----GCGu--UUGCG- -5'
1564 3' -58.8 NC_001347.2 + 196899 0.66 0.880958
Target:  5'- -aGCGUGUC-GCUGCGcaucaagCGCGAGCuGCu -3'
miRNA:   3'- ugCGCGCAGcCGGCGCa------GCGUUUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.